PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.42LIU
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 363aa    MW: 41459.3 Da    PI: 7.2018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.42LIUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-112668148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++    G g+W+ Ia++ g     k+c++rw +yl
      Aradu.42LIU 26 KGLWSPEEDEKLLRYMLTSGQGCWTDIAQRCG-----KSCRLRWINYL 68
                     678*****************************.....*********97 PP
2Myb_DNA-binding51.22.9e-1674118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++++E++l+v+++  lG++ W+ Ia++++ gRt++++k++w++ 
      Aradu.42LIU  74 RGAFSPQEEDLIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 118
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.512168IPR017930Myb domain
SuperFamilySSF466891.87E-2624115IPR009057Homeodomain-like
SMARTSM007178.1E-92570IPR001005SANT/Myb domain
PfamPF002498.8E-102668IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-192775IPR009057Homeodomain-like
CDDcd001675.89E-92968No hitNo description
PROSITE profilePS5129424.25169123IPR017930Myb domain
SMARTSM007177.6E-1673121IPR001005SANT/Myb domain
PfamPF002497.8E-1574118IPR001005SANT/Myb domain
CDDcd001671.19E-1076119No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2576122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MRKPDNNMGK DKMGNSNTII KSKLRKGLWS PEEDEKLLRY MLTSGQGCWT DIAQRCGKSC  60
RLRWINYLRP DLKRGAFSPQ EEDLIVHLHS ILGNRWSQIA ARLPGRTDNE IKNFWNSTLK  120
KRFKLSTNNT PSPNNNNSSS DDSSSDPNNA NGIMMVHLNE QHHDLMPMSM CMDSSYSSSS  180
TSSSISSMHQ QQAAPMVFSD PFSILINNNN NDVPQCLMTQ FGGMVEEGHN GNYGIIGSNN  240
KIGLERELSL PPLESDNNAP IIDVKNHNNH FNHHHHSSCF NNANHQIHQK VSKVEELFGF  300
GNNNNSDHHG HQQLHQGENL KIGEWDLEDN FKISFLPFSL SFFHSLSFYF FFYPFFNLFL  360
KIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27241225107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.42LIU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015937160.20.0transcription factor MYB46
TrEMBLA0A445BZW50.0A0A445BZW5_ARAHY; Uncharacterized protein
STRINGGLYMA13G27310.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-65myb domain protein 83