PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.401HT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 415aa    MW: 46867.6 Da    PI: 8.2953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.401HTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.5e-12321413397
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  k l +s+   ++ l+lp +fa++   +  +   +++   +g  +++ l++++++++ ++lt+GWk+ +++ng  +g ++ F+++  +e+++ v+v+
  Aradu.401HT 321 KLL-TSNQVDNSSLILPLRFAQNAFPSRYN--NVKVILYNGCCYRLGLRWNNSRKGqVYLTRGWKSLARDNGFSSGTVLKFHVSPADETTMPVQVL 413
                  455.555555566********555433233..56666666*********97776667*************************87667777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-421121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-745120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-12317413IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138318415IPR003340B3 DNA binding domain
CDDcd100173.92E-9319414No hitNo description
SMARTSM010193.2E-4319408IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-11319414IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-9321412IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
VPIACSNQAH YISNIMMAIE KRLIPSDFDD DRIFYLHVDP LAIIHELPSL FYRKYRPLLG  60
ERMIVMDLNN THIELSLCKG NSSGYIVHGF ENLVNCFGLS SGGWIKIMYV GEDVFVVMKV  120
KDSFMATKEL SYPSPKLASN YYHVTHESTS RAVPLEFCRP IIFNPTPQEN ATKKLPTQDS  180
HTQGPCQYHI ATTPQTASFD YPSEIETSSN ETYCLDHYQK NGYLNQPPLP DETLPTGELR  240
NGSVILPTRI FNNLSQAQTS PLPAGYVSLE EKVILNNPTS LLVKRQRSSP QNADETNIPP  300
PVMPAPIIPT TRSYRMYTCM KLLTSNQVDN SSLILPLRFA QNAFPSRYNN VKVILYNGCC  360
YRLGLRWNNS RKGQVYLTRG WKSLARDNGF SSGTVLKFHV SPADETTMPV QVLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.401HT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015940715.10.0uncharacterized protein LOC107466241