PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.3T7HX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 362aa    MW: 40542.4 Da    PI: 9.3909
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.3T7HXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G g W+t ++  g++R++k+c++rw +yl
      Aradu.3T7HX 17 KGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYL 64
                     79********************************************97 PP
2Myb_DNA-binding56.65.9e-1870114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e+++++++ lG++ W+tIa+ ++ gRt++++k++w+++
      Aradu.3T7HX  70 RGRFSFEEEEIIIQLHTVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-251067IPR009057Homeodomain-like
PROSITE profilePS5129419.3931264IPR017930Myb domain
SuperFamilySSF466891.91E-3114111IPR009057Homeodomain-like
SMARTSM007172.0E-151666IPR001005SANT/Myb domain
PfamPF002493.2E-171764IPR001005SANT/Myb domain
CDDcd001671.92E-121964No hitNo description
PROSITE profilePS5129426.10765119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2668119IPR009057Homeodomain-like
SMARTSM007177.0E-1669117IPR001005SANT/Myb domain
PfamPF002491.2E-1470114IPR001005SANT/Myb domain
CDDcd001671.61E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAKSCSSEKN NNNGLKKGPW TPEEDQKLID YIQKHGHGKW RTLPKNAGLK RCGKSCRLRW  60
ANYLRPDIKR GRFSFEEEEI IIQLHTVLGN KWSTIAANLP GRTDNEIKNY WNTHIKKKLL  120
KMGIDPMTHT PRLDVFQLSS ILSSTLYNNN NSPQINNNYY PTLFGIGSSS VANNPSQVLS  180
LLASLLSYQS RNNDNILNQQ NQLGTISPLL LQNQMHLNPS QAFQPNQPCA NNFHVETQNM  240
KSKLEPQIPS TSTPFSHQNT LPNLWHYNGG GYMANQQGFP SLLENNNQIL CSEGIMANFN  300
LMNSMLSSST ASSSSPSNLN SSSSTTFVNG TTTTEDERDS YGSNMLMYKY NISNGLNNSG  360
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32151195108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.3T7HX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312011e-122KT031201.1 Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936579.10.0transcription factor MYB74
RefseqXP_025614815.10.0transcription factor MYB41
TrEMBLA0A445BYG00.0A0A445BYG0_ARAHY; Uncharacterized protein
STRINGGLYMA13G35810.21e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-85MYB-like 102