PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.3MQ4D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 110aa MW: 12265 Da PI: 10.372 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.1e-14 | 5 | 56 | 31 | 82 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 + +++l+ +d++g +W +k+i+r++++++++t+GW+ Fv +++L +gD +v Aradu.3MQ4D 5 TPTQELVAKDLHGYEWGFKHIVRGQPRKHLITTGWSTFVASKRLVAGDPFVG 56 445699******************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.306 | 1 | 69 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-16 | 2 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-16 | 2 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-9 | 4 | 52 | No hit | No description |
Pfam | PF02362 | 1.9E-11 | 5 | 55 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MSQPTPTQEL VAKDLHGYEW GFKHIVRGQP RKHLITTGWS TFVASKRLVA GDPFVGHNGE 60 LRAELRRSTP QPSSMPSSVI SSQSMHLGVL ATAYHDVATQ TLFVVYYKSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-42 | 1 | 110 | 155 | 267 | Auxin response factor 1 |
4ldw_A | 5e-42 | 1 | 110 | 155 | 267 | Auxin response factor 1 |
4ldw_B | 5e-42 | 1 | 110 | 155 | 267 | Auxin response factor 1 |
4ldx_A | 5e-42 | 1 | 110 | 155 | 267 | Auxin response factor 1 |
4ldx_B | 5e-42 | 1 | 110 | 155 | 267 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.3MQ4D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016183752.1 | 4e-54 | auxin response factor 9 isoform X1 | ||||
Refseq | XP_020971749.1 | 2e-54 | auxin response factor 9 isoform X2 | ||||
Refseq | XP_025633467.1 | 4e-54 | auxin response factor 9 | ||||
Swissprot | Q9ZPY6 | 2e-49 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A2U1P256 | 2e-52 | A0A2U1P256_ARTAN; Auxin response factor | ||||
TrEMBL | A0A444ZNN2 | 4e-52 | A0A444ZNN2_ARAHY; Auxin response factor | ||||
STRING | XP_010266558.1 | 2e-52 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15884 | 6 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 6e-43 | auxin response factor 9 |
Publications ? help Back to Top | |||
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