PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.3A6ZT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 354aa MW: 39582.5 Da PI: 8.4277 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 82 | 8.5e-26 | 114 | 210 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkks..isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqr+++eeD i +L+Gl +f aktgk+p++ +d+fy+f+k+s i ++vs ql +KirrLKkKf+++ +k k+gk + k+h+ ++f+l k +Wg Aradu.3A6ZT 114 LFQRVFNEEDAIGILKGLSEFIAKTGKEPYKCVDEFYDFMKGSnlIRANVSCMQLKDKIRRLKKKFENNLEKEKNGKG-TTLKPHELEAFQLEKNVWG 210 79**************************************9755599*************************888887.6779**************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.0E-24 | 115 | 210 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
PQSEQEDSSE VEEAATSSDE DEDIDEGEDE REKHVLVPKK LQPQKVSKLS SSSSKPSPKL 60 KSQPSASVSQ TKSGSKRAAK NSIDHSNQPK RGKKAQEDHA IGSIEEDPQK SKSLFQRVFN 120 EEDAIGILKG LSEFIAKTGK EPYKCVDEFY DFMKGSNLIR ANVSCMQLKD KIRRLKKKFE 180 NNLEKEKNGK GTTLKPHELE AFQLEKNVWG HDGRGGEAVL KETTEKDTVN NEKAAKITPK 240 KARMSEFSVT SLALTSMLIY DGTFGKTFGK DYIRKGIELL GVSKREDIEA RWRKFKDAEN 300 KLYAEIAEFY AEQAKLIYQA NSSSSSYIVK DDTLSKTGRS VSSICGICNC MNLV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.3A6ZT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016176119.1 | 1e-180 | probable transcription factor At1g11510 isoform X1 | ||||
Refseq | XP_025676135.1 | 1e-180 | probable transcription factor At1g11510 | ||||
TrEMBL | A0A445C6H3 | 1e-173 | A0A445C6H3_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-14 | DNA-binding storekeeper protein-related transcriptional regulator |