PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.33QAR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 110aa MW: 12343 Da PI: 9.0997 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 64.2 | 1.5e-20 | 15 | 49 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C C+tt+TplWR gpdg+++LCnaCGl+yrk+++ Aradu.33QAR 15 CNDCHTTTTPLWRAGPDGPRSLCNACGLRYRKRRK 49 99******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.6E-17 | 9 | 68 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 14.035 | 9 | 45 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-15 | 12 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.0E-17 | 13 | 49 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.66E-15 | 14 | 62 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 15 | 40 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.5E-18 | 15 | 49 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
KIMEVQVGAV SNRSCNDCHT TTTPLWRAGP DGPRSLCNAC GLRYRKRRKA LDKGGAKKSR 60 KRNNRATSEH DDEVDFGCNL EPYTLHGRSQ FKLKEEEEAA ILLMALSCAY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.33QAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020981346.1 | 1e-76 | GATA transcription factor 15 | ||||
Refseq | XP_025604007.1 | 1e-76 | GATA transcription factor 15 | ||||
TrEMBL | A0A444YIQ7 | 5e-75 | A0A444YIQ7_ARAHY; Uncharacterized protein | ||||
STRING | XP_010268075.1 | 3e-25 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 2e-15 | GATA transcription factor 15 |