PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.31JVP | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 148aa MW: 15878.9 Da PI: 8.6737 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.7 | 2.1e-34 | 14 | 82 | 4 | 72 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 ++++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++ +a Aradu.31JVP 14 SSRSNKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTVPAAP 82 67899*********************************************************6655522 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.9E-30 | 17 | 112 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.025 | 18 | 72 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
LRKSSGAGAL STTSSRSNKD RHTKVNGRGR RVRMPPLCAA RIFQLTRELG HRSDGETIEW 60 LLRHAEPSII AATGTGTVPA APPSASATPT MVCAGGSQWP SCRLDLCQPP PGMEYASVNG 120 HRYMPFTSLL LQPATADESQ HEEALSDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.31JVP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 2e-48 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025635107.1 | 4e-95 | transcription factor TCP11-like | ||||
Refseq | XP_025663894.1 | 4e-95 | transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 5e-41 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A394DAP5 | 3e-66 | A0A394DAP5_LUPAN; Uncharacterized protein | ||||
STRING | XP_004497526.1 | 3e-64 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 6e-37 | TCP family protein |