PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2MF5E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 265aa    MW: 30985.5 Da    PI: 10.0276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2MF5EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-1551144598
                  -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  l++s+v   g++ +p +f e++   +k  +s t+ + d +  +W++k++y+ +++r+ + + W +F k+n+L++gD++vF+++ + +  ++++ ++r
  Aradu.2MF5E  51 LKRSYVDY-GIMQIPCSFSEQYlyRLK--GSGTIWVSDNEDIKWSIKYSYSDSQNRTSIYGDWHKFRKENELEVGDVCVFEMMTEvEPVSFKIYIIR 144
                  55555554.67***********66444..778*************************************************9987787777777766 PP
2B336.21.1e-11172261299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +   t+s   +s ++ +p+kf+++++     +k++tl+    + W+vk+   +++ +  + kGW +F+++ +L +gD++ F+l++ ++f ++v++ r+
  Aradu.2MF5E 172 ELLITKSKLKASTLVKIPRKFIRQNERCV--GKDVTLKV-GKELWTVKV--LNSG-S--FCKGWIQFARECKLVVGDICHFELTDPTNFVFHVSISRE 261
                  5556777788888899*********6553..44677666.6689*****..6665.3..679*********************988999999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1839144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1943138IPR015300DNA-binding pseudobarrel domain
CDDcd100177.97E-1645144No hitNo description
PROSITE profilePS5086311.81546146IPR003340B3 DNA binding domain
SMARTSM010194.0E-447146IPR003340B3 DNA binding domain
PfamPF023627.7E-1454144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-15165260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15168260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.63171262IPR003340B3 DNA binding domain
SMARTSM010194.3E-5171262IPR003340B3 DNA binding domain
CDDcd100174.09E-12171260No hitNo description
PfamPF023624.0E-9172260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRKRTKTKGT SKSMLKKVRR NMKCDDNRSK ALERAEAISS KLKNPSFVRD LKRSYVDYGI  60
MQIPCSFSEQ YLYRLKGSGT IWVSDNEDIK WSIKYSYSDS QNRTSIYGDW HKFRKENELE  120
VGDVCVFEMM TEVEPVSFKI YIIRVRQESS SSYPHQFQES ERPNRQANNQ FELLITKSKL  180
KASTLVKIPR KFIRQNERCV GKDVTLKVGK ELWTVKVLNS GSFCKGWIQF ARECKLVVGD  240
ICHFELTDPT NFVFHVSISR EEHGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2MF5E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020989160.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445B0U80.0A0A445B0U8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-09B3 family protein