PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2KR68
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 459aa    MW: 53307.1 Da    PI: 8.413
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2KR68genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.36e-2466155290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r++k+ ++ + gei+++tfvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHn ela
  Aradu.2KR68  66 FYNNYSQLKGFASRRDKTVRN-TAGEIVWYTFVCNRQGFREKKWLEnVDRKREHKVVTRCGCMAEMRIKRKDgSGRWYVSRFVEEHNQELA 155
                  9****************9998.8888***************998764678888999*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2166155IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.742296329IPR007527Zinc finger, SWIM-type
SMARTSM005750.005304331IPR006564Zinc finger, PMZ-type
PfamPF044340.0011305326IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPAGSEMFVL FFQDTMYDTR VEEDGELSDW EGRWASMLPL FLGLDGLRVE DVLEMEFSSP  60
QEANGFYNNY SQLKGFASRR DKTVRNTAGE IVWYTFVCNR QGFREKKWLE NVDRKREHKV  120
VTRCGCMAEM RIKRKDGSGR WYVSRFVEEH NQELAYGKLV DYLRSHRKIS EVEVAQLTSM  180
REIGISIPKI YESFAAQLGG FNLVTFTKQD MCVDFLRDTE DELDFRSWYG TPVLQTEFIE  240
LEKFGWTMFT RKMFLRLRDS LKRCVRVRIC EFNDTDNPHA YTLQKYRRPE MNWKVYRDHI  300
SNRFSCTCMR MESFGIPCVH ILSVCVRLDL VEIPESLVLR RWSKAAKLEI HNHCVEQHTA  360
DPSVTYRTQL GAFSQLCKRL GRVACISDED FKLYSKKLMS DALFLEIKYG LRPSTDDITT  420
ANDCGVKDPI RVKTKGTGRM SQPGGSAPKT KKSAAHAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2KR68
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970746.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXD50.0A0A444ZXD5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5