PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2JP0X
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 538aa    MW: 60118.6 Da    PI: 9.7824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2JP0XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.6e-1316673487
                 SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                   +++++ +g+sW v+l   k  + +++ +GW +Fv +++L+ gD +vF+++g+
  Aradu.2JP0X 16 GLVSVKSHRGKSWPVQL--IKMENDMFFHQGWPSFVGDHHLECGDLLVFRYEGN 67
                 2799*************..88888899***********************9986 PP
2B348.91.2e-15188280196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e   +v++
  Aradu.2JP0X 188 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPsTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECEL--LVRI 280
                  556677778888899*******98996..46999***************9445555667999**********************9985444..6665 PP
3B3543.1e-17418510196
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k++++ +v+ s  l +p +f ++h        +++++l++++g+sW+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+   ++e++v 
  Aradu.2JP0X 418 FVKIMKKFNVSGSYTLKIPYQFSAAHlpA----YKTEIILRNLKGESWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVA--QGEMRVY 509
                  89999999***************999533....4468***************77666666799***********************986..5666776 PP

                  E CS
           B3  96 v 96 
                  +
  Aradu.2JP0X 510 I 510
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.023177IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534192IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-14368IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-13367IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-13366No hitNo description
PfamPF023622.9E-11567IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20180281IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-22181281IPR015300DNA-binding pseudobarrel domain
CDDcd100177.08E-19186280No hitNo description
SMARTSM010194.2E-11188284IPR003340B3 DNA binding domain
PfamPF023622.7E-12188279IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774188284IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-22410511IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-23411512IPR015300DNA-binding pseudobarrel domain
CDDcd100174.22E-20416510No hitNo description
SMARTSM010196.4E-14418514IPR003340B3 DNA binding domain
PfamPF023621.7E-14418510IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62418514IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
KNPAAFIHHF LGRANGLVSV KSHRGKSWPV QLIKMENDMF FHQGWPSFVG DHHLECGDLL  60
VFRYEGNFDN IRGHKRDRNE KSSLDVIVEG ATKKMRGNNA DNQELKLSIV GKDILQYELV  120
KPISMFKEKE ETSRACSTND IPLPFHVGNS NEDEDADQYI LNGISLSNLA AHDEKKVARS  180
FTSSFPYFVR IMKSFNVSGS YTLNIPYQFS MAHLPNCKIK IILHNLKGEH WTVNSVPSTR  240
VHTSHTLCGG WMAFVRGNNI KVGDVCIFEL VHECELLVRI AGGGKDLQDP VAKPDLSNPS  300
AGHAITCHKA SRYMSVNPKD NPKNIINVDQ SVKKRSKVGQ EAAFSIELRK SGKRSNSSKK  360
TGLGNRTKAA NKKLETAAQK RHRVEDELSS QANAGLRMLF ALDEQRVAQA FTSPFPNFVK  420
IMKKFNVSGS YTLKIPYQFS AAHLPAYKTE IILRNLKGES WTVNSVPDAK GRTVHTFCGG  480
WMAFVRDNDI NFGDTCIFEL VAQGEMRVYI SGVGKEGLEH QNGQVKLNRL LANVPSTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2JP0X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972513.10.0B3 domain-containing protein Os03g0619600 isoform X2
TrEMBLA0A444YWM00.0A0A444YWM0_ARAHY; Uncharacterized protein
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-15B3 family protein