PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2D5HC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 631aa    MW: 69146.1 Da    PI: 8.4115
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2D5HCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094895261954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Aradu.2D5HC 489 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 526
                  664559******************************88 PP
2BELL93.61.9e-303664201872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+++v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Aradu.2D5HC 366 KVDRRYSHYCEQMHMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQL 420
                  7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-64291418IPR006563POX domain
PfamPF075268.5E-39296417IPR006563POX domain
PROSITE profilePS5007112.568467530IPR001356Homeobox domain
CDDcd000861.72E-12470531No hitNo description
SMARTSM003892.0E-9470534IPR001356Homeobox domain
SuperFamilySSF466894.28E-17471537IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28473533IPR009057Homeodomain-like
PfamPF059203.1E-18487526IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MSQDYHHHNQ GIFTFSNNGF ERSTQVTNQE HHHQHQHHLA QQIRRDKVRM FNFPPVVDAA  60
AGELLEQPMI ATFRSPTTTR SLGSDWYGGN RQGMITGLGA LGDNSKNNHN QHDQSNLNNG  120
GVIVHHQHDN QIPSINADSA AAMQLFLMNP QTTTRSPSPP SHHTTPTPPS SSSTLHMLLP  180
NPNPNTSLQG FHGGGGGTFN QITWAPDSAQ EAQGLSLSLS SSLQHLEAAK AEELRMGESG  240
FLFYNQGVGG GPSSSSSSAQ YPYKNLPGHH QQHQALHIQG PIGFGSSSSS LGLVNVLRNS  300
KYVKAAQELL EEFCSVGRGQ FKKNKFTRQL SNPSSNQGGA AAASSSSSKE LPPLSASDRI  360
EHQRRKVDRR YSHYCEQMHM VVNSFDLVMG YGAAVPYTAL AQKAMSRHFR CLKDAITTQL  420
KHSCEVLGEK EGVGTTGLTK GETPRLKMLE QSLRQQRAFH QMGMIEQEAW RPQRGLPERS  480
VNILRAWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEDINPSLA  540
AINRQGLEIQ AKQPATSSTA ITTVTPPVVS QCFDSEHLLN EDTCGHGSIV SAEYGTPSGV  600
AAMTEIGSSS STLIRFGTTA APGDVSLLNW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16476536565Homeobox protein Meis2
3k2a_B2e-16476536565Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2D5HC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015948622.10.0BEL1-like homeodomain protein 4
RefseqXP_015948692.10.0BEL1-like homeodomain protein 4
RefseqXP_015948750.10.0BEL1-like homeodomain protein 4
RefseqXP_020983240.10.0BEL1-like homeodomain protein 4
RefseqXP_025686504.10.0BEL1-like homeodomain protein 4
RefseqXP_025686513.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-137BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A445EXC50.0A0A445EXC5_ARAHY; Uncharacterized protein
STRINGPOPTR_0007s12170.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-121BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]