PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.26U2T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 273aa    MW: 30969.9 Da    PI: 6.6775
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.26U2TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.3e-082142472154
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  k +yp++e++++L +++gL+ +q+ +WF N+R +
  Aradu.26U2T 214 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 247
                  469*****************************87 PP
2ELK301.1e-10168189122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+ +++++++E++
  Aradu.26U2T 168 ELKHELKQGYKDKIVDIREEIL 189
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-20347IPR005540KNOX1
PfamPF037901.9E-18546IPR005540KNOX1
SMARTSM012561.5E-2756111IPR005541KNOX2
PfamPF037911.8E-2060110IPR005541KNOX2
SMARTSM011885.1E-4168189IPR005539ELK domain
PROSITE profilePS512139.969168188IPR005539ELK domain
PfamPF037898.2E-6168189IPR005539ELK domain
PROSITE profilePS5007111.726188251IPR001356Homeobox domain
SMARTSM003894.7E-11190255IPR001356Homeobox domain
SuperFamilySSF466892.18E-16190254IPR009057Homeodomain-like
CDDcd000867.03E-12191252No hitNo description
Gene3DG3DSA:1.10.10.602.2E-25195252IPR009057Homeodomain-like
PfamPF059206.4E-18208247IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
QNARYKAEIL SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSSFAHAPL  60
GDDKELDQFL SHYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA  120
TMSDDEDDQV DSDANLFDGG LDGSDSMGFG PLVPTENERS LMERVRHELK HELKQGYKDK  180
IVDIREEILR KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW  240
FINQRKRNWH SNPSTSTSLK SKRKRCLDGM GFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12191255872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244264RKRNWHSNPSTSTSLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.26U2T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015945370.10.0homeobox protein knotted-1-like 3
RefseqXP_025623574.10.0homeobox protein knotted-1-like 3 isoform X2
RefseqXP_025682475.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-175KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A444X5T80.0A0A444X5T8_ARAHY; Uncharacterized protein
TrEMBLA0A445B4Y40.0A0A445B4Y4_ARAHY; Uncharacterized protein
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-163KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]