PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.25STL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family BBR-BPC
Protein Properties Length: 339aa    MW: 37888.8 Da    PI: 9.8466
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.25STLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind393.53.1e-12013391301
    GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 
                  mdd g+re  r+k+ +y+++  + l +++   +q+m+++aerda i+ernlalsekkaa+aerdmaflqrd+a++ern+al+erdn+++al+++ensl
  Aradu.25STL   1 MDDAGHREngRHKAdQYKSSpgQWLMQHQpsMKQIMALMAERDALIQERNLALSEKKAALAERDMAFLQRDAAITERNNALIERDNAIAALQYRENSL 98 
                  9*****999*****9***555544444431145***************************************************************99 PP

    GAGA_bind  92 a.....salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkke 181
                  +     s++p+g+q+++g k++++ qq +++  ++++d ++ +re++++++lp+++ ++ea +++      r+k+pke+k+ +++kk +k ++kvk++
  Aradu.25STL  99 TnssmpSSCPPGCQISRGIKHMHHPQQqVHHmpNNMGDGSYTAREMHTSDSLPTVTIPSEAGKSR------RGKRPKEPKSVSPNKKASKGTRKVKRD 190
                  8899999******************9955669999******************998777666544......556888888888888888888888888 PP

    GAGA_bind 182 sader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkr 250
                   +d++                             +ka++ks+dl+ln+v++Dest+P+P CsCtG+lrqCYkWGnGGWqSaCCttt+SvyPLP+++++
  Aradu.25STL 191 DEDTHkmmfgkanewkssqemingsedlnkqlevTKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNK 288
                  87744588999999************************************************************************************ PP

    GAGA_bind 251 rgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  r+aRi+grKmS++af+klL++La+eG+dlsnpvDLkdhWAkHGtn+++ti+
  Aradu.25STL 289 RHARIGGRKMSGSAFNKLLSRLATEGHDLSNPVDLKDHWAKHGTNRYITIK 339
                  **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.5E-1661339IPR010409GAGA-binding transcriptional activator
PfamPF062173.1E-1011339IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDDAGHRENG RHKADQYKSS PGQWLMQHQP SMKQIMALMA ERDALIQERN LALSEKKAAL  60
AERDMAFLQR DAAITERNNA LIERDNAIAA LQYRENSLTN SSMPSSCPPG CQISRGIKHM  120
HHPQQQVHHM PNNMGDGSYT AREMHTSDSL PTVTIPSEAG KSRRGKRPKE PKSVSPNKKA  180
SKGTRKVKRD DEDTHKMMFG KANEWKSSQE MINGSEDLNK QLEVTKADWK SQDLALNQVA  240
YDESTMPAPG CSCTGVLRQC YKWGNGGWQS ACCTTTLSVY PLPAVPNKRH ARIGGRKMSG  300
SAFNKLLSRL ATEGHDLSNP VDLKDHWAKH GTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.25STL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969865.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015969866.10.0protein BASIC PENTACYSTEINE6
RefseqXP_020980171.10.0protein BASIC PENTACYSTEINE6
RefseqXP_020980172.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025604874.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025604875.10.0protein BASIC PENTACYSTEINE6
RefseqXP_025604876.10.0protein BASIC PENTACYSTEINE6
RefseqXP_029143325.10.0protein BASIC PENTACYSTEINE6
RefseqXP_029143326.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-148BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A445CJZ60.0A0A445CJZ6_ARAHY; Uncharacterized protein
STRINGGLYMA04G02860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-142basic pentacysteine 6