PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1V7PF
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 212aa    MW: 23720.7 Da    PI: 6.2253
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1V7PFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC +C ++ H
  Aradu.1V7PF  4 LCDVCENAAAILFCAADEAALCGSCDDKVH 33
                 7*******9*****************9998 PP
2zf-B_box26.91e-085292238
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Aradu.1V7PF 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHE 92
                 5799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-7147IPR000315B-box-type zinc finger
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
CDDcd000211.55E-5345No hitNo description
PfamPF006432.0E-6341IPR000315B-box-type zinc finger
SMARTSM003368.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2435196IPR000315B-box-type zinc finger
PfamPF006431.2E-65292IPR000315B-box-type zinc finger
CDDcd000214.40E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCEN AAAILFCAAD EAALCGSCDD KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HERYLLLRQR IEFPSDKTGG LDEFGLQTLD  120
QNEPRRDQSQ SIKLNARDNH QSHNHKVISV TMLENNIDGH RKVDKKLFDL NTRPQRINGS  180
TSNNLDKDIL GSNNHDSIGV VPVELFKQEA EK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1V7PF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951953.11e-157B-box zinc finger protein 19
RefseqXP_015951954.11e-157B-box zinc finger protein 19
RefseqXP_020993084.11e-157B-box zinc finger protein 19
SwissprotC0SVM52e-80BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A445E3691e-154A0A445E369_ARAHY; Uncharacterized protein
STRINGGLYMA12G04131.21e-112(Glycine max)
STRINGXP_007131751.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-83DBB family protein