PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.1RN6D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 83aa MW: 9935.54 Da PI: 10.9379 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 89 | 1e-27 | 2 | 51 | 4 | 53 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlq 53 kkdrh kihT++++RdRRvRls+e+ ++fFdLqd+L f k+s+t+eWL++ Aradu.1RN6D 2 KKDRHNKIHTSQELRDRRVRLSSEISRKFFDLQDMLEFNKPSNTLEWLFT 51 9***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.7E-25 | 2 | 51 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 23.92 | 2 | 60 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MKKDRHNKIH TSQELRDRRV RLSSEISRKF FDLQDMLEFN KPSNTLEWLF TIEAFKVKWK 60 GGKGKLIFGR FDVKGYVTGV WKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.1RN6D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143293.1 | 5e-26 | hypothetical protein PHAVU_007G060100g | ||||
Refseq | XP_014523924.1 | 6e-26 | transcription factor DICHOTOMA-like | ||||
Refseq | XP_020232454.2 | 7e-26 | transcription factor DICHOTOMA isoform X1 | ||||
Refseq | XP_027933862.1 | 4e-26 | transcription factor DICHOTOMA-like | ||||
Refseq | XP_029128870.1 | 4e-26 | transcription factor DICHOTOMA isoform X2 | ||||
Swissprot | Q9SBV9 | 4e-19 | CYCLD_ANTMH; Transcription factor CYCLOIDEA (Fragment) | ||||
TrEMBL | A0A0S3SMV7 | 1e-24 | A0A0S3SMV7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3W0Y8 | 1e-24 | A0A1S3W0Y8_VIGRR; transcription factor DICHOTOMA-like | ||||
TrEMBL | V7BBQ4 | 1e-24 | V7BBQ4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143293.1 | 2e-25 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-18 | TCP family protein |
Publications ? help Back to Top | |||
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