PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.1LG94

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 908aa MW: 103371 Da PI: 7.1324

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.1LG94	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.8	2.2e-49	32	149	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpk.sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 +e ++rwl+++ei+aiL n + +++ ++ + p+ sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++np f rrc Aradu.1LG94 32 EEaRTRWLRPNEIHAILCNSKYFTINVKPVNLPTcSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRC 129 4559*********************9999997579********************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 ywlL+++le+ivlvhy+e++ Aradu.1LG94 130 YWLLDKSLEHIVLVHYRETQ 149 ***************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.749	27	154	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-73	30	149	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.0E-43	33	147	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	3.6E-5	336	450	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.55E-16	362	448	IPR014756	Immunoglobulin E-set
Pfam	PF01833	4.3E-4	363	447	IPR002909	IPT domain
CDD	cd00204	1.12E-14	552	656	No hit	No description
Pfam	PF12796	2.3E-7	552	626	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.33E-18	552	659	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.1E-17	555	659	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.857	564	656	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.4E-5	597	626	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.461	597	629	IPR002110	Ankyrin repeat
SMART	SM00248	2400	636	667	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.3E-6	709	811	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.943	745	771	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	22	760	782	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	761	790	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.25	763	781	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0022	783	805	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.407	784	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0059	788	805	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	859	881	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.114	861	889	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MMMANNFAGR LVGSEIHGFH TLQDLDLGNI MEEARTRWLR PNEIHAILCN SKYFTINVKP 60 VNLPTCSGTI VLFDRKMLRN FRKDGHNWKK KKDGKTVKEA HEHLKVGNEE RIHVYYAHGQ 120 DNPGFVRRCY WLLDKSLEHI VLVHYRETQE LQASPAAPIN SHSSSGSDPN APWILSEEID 180 SGIKTTNAGE INNNITVKNH EQRLHEINTL EWDDLVVAND PNTSTINGGG KVPHFDQQNQ 240 SNLSNVANNL SAEIPSFDNL TQPIAGSHTF PENLNLQTDN QMNPNEQINH NVLVNGVSLD 300 TLGNGGLQSQ DSFGMWVNHM LSDSPCSVDE SAVESSVSSI HESYSSLVGD DKQTSLPEQV 360 FNLTDVSPAW VPSTEKSKIL VTGFFHKDAD LSKSNLLCVC GDVSVPVECV QVGVYRCWVP 420 PHSPGFVNLY LSFDGHKPIS QVVNFEYRTP ILHDPVAFME NNDNWDKFQF EMRLSYLLFT 480 KKNSLDVFSC TVSPKRLKEA RNFAIRTSFI SNSWQYLMKS TQYNRIPYSQ AKEDLFGISL 540 RSRLKEWILE RIILGCKTTE YDAQGQSVIH LCAILDYTWA VSLFSWSGLS LDFRDKLGWT 600 ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TPQNPGGQTA ADLAYMNGYD GLAAYLSEKA 660 LVRQFNDMSL AGNISGQLET NTTDPEDPEN LSEDQLYLKD TLAAYRTAAQ AAARIQAAFR 720 EHSLKLQTET IELLTPEAEA RKIVAAMKIQ HAFRNFESRK MMKAAARIQY TYRTWKIRRE 780 FLNMRHQAIK IQAAFRCFQL RKHYRKILWS VGVVEKALLR WRLKRKGLRG LHVNNADQKE 840 EGDGEEEFFR IGRKQAEERV ERSVVRVQAM FRSKKAQQDY RRMKLALNQA NLDREYEEFL 900 GTEDNMEI

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MMMANNFAGR LVGSEIHGFH TLQDLDLGNI MEEARTRWLR PNEIHAILCN SKYFTINVKP  60
VNLPTCSGTI VLFDRKMLRN FRKDGHNWKK KKDGKTVKEA HEHLKVGNEE RIHVYYAHGQ  120
DNPGFVRRCY WLLDKSLEHI VLVHYRETQE LQASPAAPIN SHSSSGSDPN APWILSEEID  180
SGIKTTNAGE INNNITVKNH EQRLHEINTL EWDDLVVAND PNTSTINGGG KVPHFDQQNQ  240
SNLSNVANNL SAEIPSFDNL TQPIAGSHTF PENLNLQTDN QMNPNEQINH NVLVNGVSLD  300
TLGNGGLQSQ DSFGMWVNHM LSDSPCSVDE SAVESSVSSI HESYSSLVGD DKQTSLPEQV  360
FNLTDVSPAW VPSTEKSKIL VTGFFHKDAD LSKSNLLCVC GDVSVPVECV QVGVYRCWVP  420
PHSPGFVNLY LSFDGHKPIS QVVNFEYRTP ILHDPVAFME NNDNWDKFQF EMRLSYLLFT  480
KKNSLDVFSC TVSPKRLKEA RNFAIRTSFI SNSWQYLMKS TQYNRIPYSQ AKEDLFGISL  540
RSRLKEWILE RIILGCKTTE YDAQGQSVIH LCAILDYTWA VSLFSWSGLS LDFRDKLGWT  600
ALHWAAYYGR EKMVATLLSA GAKPNLVTDP TPQNPGGQTA ADLAYMNGYD GLAAYLSEKA  660
LVRQFNDMSL AGNISGQLET NTTDPEDPEN LSEDQLYLKD TLAAYRTAAQ AAARIQAAFR  720
EHSLKLQTET IELLTPEAEA RKIVAAMKIQ HAFRNFESRK MMKAAARIQY TYRTWKIRRE  780
FLNMRHQAIK IQAAFRCFQL RKHYRKILWS VGVVEKALLR WRLKRKGLRG LHVNNADQKE  840
EGDGEEEFFR IGRKQAEERV ERSVVRVQAM FRSKKAQQDY RRMKLALNQA NLDREYEEFL  900
GTEDNMEI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.1LG94

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197987.1	0.0	calmodulin-binding transcription activator 5 isoform X4
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A445EM74	0.0	A0A445EM74_ARAHY; Uncharacterized protein
STRING	GLYMA07G37090.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]