PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.1A2XY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 586aa    MW: 65848.7 Da    PI: 6.28
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.1A2XYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.82.7e-1392165861374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L+ cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s++y+al+++e +   s+e l+++++++ev+P++kf+++ a
  Aradu.1A2XY 216 LKHVLVVCAKAIAENDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYRALRCKEPE---SAELLSYMHILYEVCPYFKFGYMSA 310
                  6899*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  d++l++L
  Aradu.1A2XY 311 NGAIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGKRLSKLAEHFKVPFEFHA-AAISGCDVQLHNL 407
                  ***************************************************998899999************************.88899******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v+pgEalaVn++++lh+++desvs+ ++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++eri+vE+++l+r
  Aradu.1A2XY 408 GVRPGEALAVNFAFMLHHMPDESVSTLNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLAR 505
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll +++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Aradu.1A2XY 506 DLVNIIACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLDNYSDR-YRLEERDGALYLGWMNRDLVASCAWK 586
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.839190567IPR005202Transcription factor GRAS
PfamPF035149.4E-137216586IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MNLLMIVTHE SQKCKAALMY SSFSLLSLCF EILLHSGFPT LEFLQSKASE HHRSSSMYYQ  60
PMQQVEAYCM PQYQALNHHQ YYNDGGHGIG SRFSNQSSSE IYCTLESSSA TGSFNVYNSP  120
STVSFSPNGS PVSLQDSQSQ SYPPDNNYGS PMSGSCITDD LSTFKHKLRE LESVMFGPDC  180
DNLDSYDSSF KDATDFMSSE MDSWRQTMVA ISCKNLKHVL VVCAKAIAEN DLLMAQWLMD  240
ELRQMVSVSG EPIQRLGAYM LEGLVARLSS SGSSIYRALR CKEPESAELL SYMHILYEVC  300
PYFKFGYMSA NGAIAEAMKD EDRVHIIDFQ ISQGSQWITL IQAFAARPGG PPHIRITGID  360
DSTSAYARGG GLHIVGKRLS KLAEHFKVPF EFHAAAISGC DVQLHNLGVR PGEALAVNFA  420
FMLHHMPDES VSTLNHRDRL LRLVKSLSPK VVTLVEQESN TNTAAFFPRF LETMDYYTAM  480
FESIDVTLPR EHKERINVEQ HCLARDLVNI IACEGVERVE RHEVLGKWRS RFAMAGFSPY  540
PLSSLVNGTI KKLLDNYSDR YRLEERDGAL YLGWMNRDLV ASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6122358525377Protein SCARECROW
5b3h_D2e-6122358525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.1A2XY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972892.10.0scarecrow-like transcription factor PAT1
RefseqXP_020982645.10.0scarecrow-like transcription factor PAT1
RefseqXP_025608249.10.0scarecrow-like transcription factor PAT1 isoform X1
RefseqXP_025608250.10.0scarecrow-like transcription factor PAT1 isoform X1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A445C2S40.0A0A445C2S4_ARAHY; Uncharacterized protein
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]