PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.12NGZ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 1216aa MW: 134513 Da PI: 9.6411

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.12NGZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	3e-08	99	134	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e +++a +++G++ Wk+++ + +R+ +++ Aradu.12NGZ 99 QWSKEELEHFYEAYRKYGKD-WKKVSLAVR-NRSVEMV 134 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.07	95	148	IPR017884	SANT domain
SuperFamily	SSF46689	1.94E-9	96	143	IPR009057	Homeodomain-like
SMART	SM00717	0.0018	96	144	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-7	99	134	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-4	99	133	IPR009057	Homeodomain-like
CDD	cd00167	3.04E-5	100	134	No hit	No description
Pfam	PF06584	1.3E-31	679	779	IPR033471	DIRP domain
SMART	SM01135	2.3E-53	679	780	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1216 aa Download sequence Send to blast
RFQSDPSTES LLRLQFAISV LYDREKRDSI SVFGHLEQTL EPQIMAPSKK SRSVNKRFPN 60 VREAALSKDK NAENASKNKQ KASPGTQKKR KLADMLGPQW SKEELEHFYE AYRKYGKDWK 120 KVSLAVRNRS VEMVEALYTM NRAYLSLPEG TASVVGLIAM MTDHYSVLGG SDSEKESNED 180 AEVSKRSQKR LRRKQMNDHK TLEGPFSDHS QSQSVASGDG CLSLLKTRNS GLTPHAVRKR 240 TPRVPISHSI GKDNAEKLFS SARQGRKQMV DTNDVTHKIA LALAEASQRG GSSKISASPN 300 KRAAPSPSKK SGKKVKSEIA GSKFCSSDLD GGSSELSLGS TEGDNGDYNR KTVNWTSREN 360 TGKGRSREKR VKHTGNNLEP EESLNMHLDE IKEASSGTDD GKNLNFIKSN FSTDFANAKN 420 PSPSSYKGSK KRSKKLQVEK DEASAFDALK TLADLSLMMP VTNADSESSA QVREGNHDVE 480 ESKVKMHKAT KIERTASSAL GKIFSDGAAI PEGEGVNQLN AGIRKRKQKS FSLNNDETHT 540 DSHLSGSQKI KDTDEVKKSM VKGKRSSVST TYPRQPKVVK SPGKMSSSGN DKREGDDSTS 600 SPIKVSSANQ VGQVNKGRPR RKMGKPKPMA EGDPVVSGNI FSSQHNKSCA SVQNSSSSPK 660 LINCLSSHQA RRWCTFEWFY SAIDYPWFSK REFVEYLDHV GLGHVPRLTR IEWGVIRSSL 720 GKPRRFSEQF LIEEKQKLNQ YRESVRSHYA EVLAGTKEGL PTDLARPLIV GQRVIAIHPK 780 TREIHNGSIL TVDHCRCLVQ FDQRELGAEF VMDIDCMPMY PFENMPTSMA RHHIAHCRIN 840 ETFNDLRLNG KLKQEIIADH TILSPSETID TTKGLHILPT KHGSSTLSNQ GVSPNSKSQV 900 KAMCNQICNA QQAPSLQPFP FEHVHSKEAD ISAISELTRA LDKKELVMSE LKVMNDGVSE 960 SQKYGDNSLK DSEPFKRSYA SLIKHLTEVS SALFRLRQRN TYQGSTTELS LKPIANYDDP 1020 GGQASSSNCS ACHNQESIPL GHIAEIVESS RRKARAMVVQ ATQAMSIFMK TDSKVEKIED 1080 AINFINNQLS VDDPAAPATN SLPADSIHVT LASQDQLTGN TLNPSVNCHA QDAEFNSSSD 1140 QNEMKIPSEL ISHCLATLLM IQKCTERQFP PADVAQVLDS AVTSLQPFCS KNLPIYGEIQ 1200 KCMGIIRNQI LALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1216 aa Download sequence Send to blast

RFQSDPSTES LLRLQFAISV LYDREKRDSI SVFGHLEQTL EPQIMAPSKK SRSVNKRFPN  60
VREAALSKDK NAENASKNKQ KASPGTQKKR KLADMLGPQW SKEELEHFYE AYRKYGKDWK  120
KVSLAVRNRS VEMVEALYTM NRAYLSLPEG TASVVGLIAM MTDHYSVLGG SDSEKESNED  180
AEVSKRSQKR LRRKQMNDHK TLEGPFSDHS QSQSVASGDG CLSLLKTRNS GLTPHAVRKR  240
TPRVPISHSI GKDNAEKLFS SARQGRKQMV DTNDVTHKIA LALAEASQRG GSSKISASPN  300
KRAAPSPSKK SGKKVKSEIA GSKFCSSDLD GGSSELSLGS TEGDNGDYNR KTVNWTSREN  360
TGKGRSREKR VKHTGNNLEP EESLNMHLDE IKEASSGTDD GKNLNFIKSN FSTDFANAKN  420
PSPSSYKGSK KRSKKLQVEK DEASAFDALK TLADLSLMMP VTNADSESSA QVREGNHDVE  480
ESKVKMHKAT KIERTASSAL GKIFSDGAAI PEGEGVNQLN AGIRKRKQKS FSLNNDETHT  540
DSHLSGSQKI KDTDEVKKSM VKGKRSSVST TYPRQPKVVK SPGKMSSSGN DKREGDDSTS  600
SPIKVSSANQ VGQVNKGRPR RKMGKPKPMA EGDPVVSGNI FSSQHNKSCA SVQNSSSSPK  660
LINCLSSHQA RRWCTFEWFY SAIDYPWFSK REFVEYLDHV GLGHVPRLTR IEWGVIRSSL  720
GKPRRFSEQF LIEEKQKLNQ YRESVRSHYA EVLAGTKEGL PTDLARPLIV GQRVIAIHPK  780
TREIHNGSIL TVDHCRCLVQ FDQRELGAEF VMDIDCMPMY PFENMPTSMA RHHIAHCRIN  840
ETFNDLRLNG KLKQEIIADH TILSPSETID TTKGLHILPT KHGSSTLSNQ GVSPNSKSQV  900
KAMCNQICNA QQAPSLQPFP FEHVHSKEAD ISAISELTRA LDKKELVMSE LKVMNDGVSE  960
SQKYGDNSLK DSEPFKRSYA SLIKHLTEVS SALFRLRQRN TYQGSTTELS LKPIANYDDP  1020
GGQASSSNCS ACHNQESIPL GHIAEIVESS RRKARAMVVQ ATQAMSIFMK TDSKVEKIED  1080
AINFINNQLS VDDPAAPATN SLPADSIHVT LASQDQLTGN TLNPSVNCHA QDAEFNSSSD  1140
QNEMKIPSEL ISHCLATLLM IQKCTERQFP PADVAQVLDS AVTSLQPFCS KNLPIYGEIQ  1200
KCMGIIRNQI LALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	617	621	RPRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.12NGZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020981893.1	0.0	LOW QUALITY PROTEIN: protein ALWAYS EARLY 3-like
TrEMBL	A0A445ELV8	0.0	A0A445ELV8_ARAHY; Uncharacterized protein
STRING	GLYMA17G02741.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding