PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.0YU93 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 297aa MW: 32587.8 Da PI: 8.3696 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.1 | 9.4e-32 | 62 | 156 | 3 | 91 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssgkaa 91 g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i++l+ ++ ++++++ + ++s+ ++++ss+++ Aradu.0YU93 62 GGKDRHSKVCTIRGLRDRRVRLSVPTAINLYDLQDRLGLNQPSKVVDWLLNAAKHEIDDLPPLPIPPSNFTlacypsLPTNKSNHKEQDSSNNNT 156 79*************************************************************99999777555555222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 30.044 | 63 | 121 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.4E-28 | 63 | 141 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MVPSLLSGTM ELEPAANQFR VKNKFDEAVV KKARRMKEIE SSSSDLAAGL DPRIVRVSRA 60 LGGKDRHSKV CTIRGLRDRR VRLSVPTAIN LYDLQDRLGL NQPSKVVDWL LNAAKHEIDD 120 LPPLPIPPSN FTLACYPSLP TNKSNHKEQD SSNNNTSAHV LPNTFLLPTT INHNHHPPSF 180 LGLLNTMPSS IDLHGGVNVV NLPFQNLGAS QILCCSPSPL QRAAAAATTT VTTTQSYFSP 240 SSLSHYNNDN VAAAMEIMDP RQINHHHQMM MVMSNHQNLA TSPNRSESQS HADDSAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-18 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-18 | 68 | 122 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.0YU93 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946201.1 | 1e-159 | transcription factor TCP17 | ||||
Refseq | XP_020988754.1 | 1e-159 | transcription factor TCP17 | ||||
Refseq | XP_020988755.1 | 1e-159 | transcription factor TCP17 | ||||
TrEMBL | A0A445B2R2 | 1e-156 | A0A445B2R2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G27155.1 | 2e-62 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28689 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-37 | plastid transcription factor 1 |