PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.0TU0Y | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 501aa MW: 56196.9 Da PI: 9.5431 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.1 | 2.4e-16 | 101 | 175 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lpk f + kk+ + ++l+ + g W++ l + + ++ ++t GWk+Fvk++ L e+Df+vFk++g+s+f v +f+ Aradu.0TU0Y 101 LPKAFYGNL--KKKLPENVSLRGPGGALWNIGL--TTREDTLYFTHGWKQFVKDHSLIENDFLVFKFNGESTF--DVLIFD 175 788888444..4568889***************..999999*************************9998888..888887 PP | |||||||
2 | B3 | 39.4 | 1.1e-12 | 376 | 460 | 3 | 90 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 v+ p +v k+ ++lp+k + +h ++++++++l+ + +W k++y + +++ l++GWk+F +n+L+e D++vFk g ++ Aradu.0TU0Y 376 VVMRPTHVYKRFFVSLPNKWILQHI--PPRTQDIILRVVH-SEWLAKYSYHNPRNTGGLSGGWKRFTLDNNLEEYDVCVFKPGGLMNN 460 578899***************9995..3455678877755.69*******88888889***********************5443444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.1E-10 | 89 | 177 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.2E-20 | 98 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.51E-19 | 99 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.1E-13 | 100 | 175 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.789 | 101 | 177 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.95E-17 | 101 | 175 | No hit | No description |
CDD | cd10017 | 2.33E-17 | 373 | 470 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.1E-16 | 373 | 470 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-15 | 374 | 461 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.925 | 374 | 472 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-12 | 374 | 472 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-11 | 376 | 461 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MEGSEISHHN RSWVEDIYWN HFQFLHFAKF MPSSYNQHLG LSYIVFGVML PTPRSLSHAL 60 NGVIRFGPPI PVNLNQAFVA FRFIHVQGIF ANLAYIQAQA LPKAFYGNLK KKLPENVSLR 120 GPGGALWNIG LTTREDTLYF THGWKQFVKD HSLIENDFLV FKFNGESTFD VLIFDGKNFC 180 EKAAAYFVRN VGNGNPENGI GRLTMRKDTE NSNAGVECAS PQKSVHVNSF PVPDAVPVRT 240 EPPSERNFNG DVEFSTPKEV VNVDGDAGVE VDANGVTMSE GRTRTTGKRI RKPTQAFNHF 300 QTKRRPVRVT KTSNAHKEVA NVVIDADADP EPASAGKSEG GNYELYVSQR RPVTEEEMNS 360 TLQMAKAACT DDSLCVVMRP THVYKRFFVS LPNKWILQHI PPRTQDIILR VVHSEWLAKY 420 SYHNPRNTGG LSGGWKRFTL DNNLEEYDVC VFKPGGLMNN TLILDVNIFR VVEEIKPLTQ 480 VRAAGSAKKS GKKKALKAIQ I |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.0TU0Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015972495.1 | 0.0 | B3 domain-containing protein REM16 | ||||
TrEMBL | A0A444YWI6 | 0.0 | A0A444YWI6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G36490.2 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-28 | B3 family protein |