PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0TU0Y
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 501aa    MW: 56196.9 Da    PI: 9.5431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0TU0YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.4e-161011751898
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  lpk f  +   kk+ +  ++l+ + g  W++ l  + + ++ ++t GWk+Fvk++ L e+Df+vFk++g+s+f   v +f+
  Aradu.0TU0Y 101 LPKAFYGNL--KKKLPENVSLRGPGGALWNIGL--TTREDTLYFTHGWKQFVKDHSLIENDFLVFKFNGESTF--DVLIFD 175
                  788888444..4568889***************..999999*************************9998888..888887 PP

2B339.41.1e-12376460390
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   v+ p +v k+  ++lp+k + +h   ++++++++l+  +  +W  k++y + +++  l++GWk+F  +n+L+e D++vFk  g ++ 
  Aradu.0TU0Y 376 VVMRPTHVYKRFFVSLPNKWILQHI--PPRTQDIILRVVH-SEWLAKYSYHNPRNTGGLSGGWKRFTLDNNLEEYDVCVFKPGGLMNN 460
                  578899***************9995..3455678877755.69*******88888889***********************5443444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.1E-1089177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-2098175IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-1999176IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-13100175IPR003340B3 DNA binding domain
PROSITE profilePS5086313.789101177IPR003340B3 DNA binding domain
CDDcd100174.95E-17101175No hitNo description
CDDcd100172.33E-17373470No hitNo description
Gene3DG3DSA:2.40.330.106.1E-16373470IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15374461IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925374472IPR003340B3 DNA binding domain
SMARTSM010191.1E-12374472IPR003340B3 DNA binding domain
PfamPF023626.0E-11376461IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEGSEISHHN RSWVEDIYWN HFQFLHFAKF MPSSYNQHLG LSYIVFGVML PTPRSLSHAL  60
NGVIRFGPPI PVNLNQAFVA FRFIHVQGIF ANLAYIQAQA LPKAFYGNLK KKLPENVSLR  120
GPGGALWNIG LTTREDTLYF THGWKQFVKD HSLIENDFLV FKFNGESTFD VLIFDGKNFC  180
EKAAAYFVRN VGNGNPENGI GRLTMRKDTE NSNAGVECAS PQKSVHVNSF PVPDAVPVRT  240
EPPSERNFNG DVEFSTPKEV VNVDGDAGVE VDANGVTMSE GRTRTTGKRI RKPTQAFNHF  300
QTKRRPVRVT KTSNAHKEVA NVVIDADADP EPASAGKSEG GNYELYVSQR RPVTEEEMNS  360
TLQMAKAACT DDSLCVVMRP THVYKRFFVS LPNKWILQHI PPRTQDIILR VVHSEWLAKY  420
SYHNPRNTGG LSGGWKRFTL DNNLEEYDVC VFKPGGLMNN TLILDVNIFR VVEEIKPLTQ  480
VRAAGSAKKS GKKKALKAIQ I
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0TU0Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972495.10.0B3 domain-containing protein REM16
TrEMBLA0A444YWI60.0A0A444YWI6_ARAHY; Uncharacterized protein
STRINGGLYMA17G36490.21e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44462658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-28B3 family protein