PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.0SC6H

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 380aa MW: 42451.8 Da PI: 7.4183

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.0SC6H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.3e-32	209	264	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Aradu.0SC6H 209 KQRRCWSQELHKRFLQALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKYRLH 264 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.556	206	266	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-29	207	267	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.24E-19	207	267	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-28	209	264	IPR006447	Myb domain, plants
Pfam	PF00249	4.3E-8	211	262	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MQRLKTMMGS RDYIQALEHE RRKIQVFSKE LPLSLDLVTQ AIEACRQQLS ETTTEYNMNG 60 HNSECSEQTT STDNGPVLEE FIPIKKRPSS PHEEEEEEED DDDDEQHSHH HRHKISKDNT 120 DKRKSDWLRS VQLWNNPEPS SPPHQEVNNK KGGAVEVKRS GSGGAFQPFH KEKEERVGGG 180 GGKAIASDDL KPPCSSNSSK KEEKEGQRKQ RRCWSQELHK RFLQALQQLG GPDSATPKQI 240 RELMKVDGLT NDEVKSHLQK YRLHTRRPSG IVHNNGSPQT TPFVLVGNIF VQPPEYAAAA 300 VATSADLAPA GIYAPVATHP PPPPPRTAAG STRRPQLKKS SNHMREDHHH SHSEEDRANH 360 SNSPASSSST HTTTTTSPAY

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MQRLKTMMGS RDYIQALEHE RRKIQVFSKE LPLSLDLVTQ AIEACRQQLS ETTTEYNMNG  60
HNSECSEQTT STDNGPVLEE FIPIKKRPSS PHEEEEEEED DDDDEQHSHH HRHKISKDNT  120
DKRKSDWLRS VQLWNNPEPS SPPHQEVNNK KGGAVEVKRS GSGGAFQPFH KEKEERVGGG  180
GGKAIASDDL KPPCSSNSSK KEEKEGQRKQ RRCWSQELHK RFLQALQQLG GPDSATPKQI  240
RELMKVDGLT NDEVKSHLQK YRLHTRRPSG IVHNNGSPQT TPFVLVGNIF VQPPEYAAAA  300
VATSADLAPA GIYAPVATHP PPPPPRTAAG STRRPQLKKS SNHMREDHHH SHSEEDRANH  360
SNSPASSSST HTTTTTSPAY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.0SC6H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015942761.1	0.0	transcription factor HRS1
Swissprot	Q9FPE8	2e-83	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A445BCI6	0.0	A0A445BCI6_ARAHY; Uncharacterized protein
STRING	XP_007143802.1	1e-139	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-72	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]