PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.0Q5NS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27136 Da    PI: 8.5923
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.0Q5NSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.7e-261058250
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 ri+n++ rqvtfskRr+g++KKA+EL +LCdaev ++ifsst klyey+
  Aradu.0Q5NS 10 RIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEYA 58
                 8***********************************************8 PP
2K-box76.66.4e-2681170998
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  + e++ + +q+e++ L+++++nLq+++R+l+G+ L  Ls+++Lq Le+qLe sl+ +R kK+++l+e+i+el +k + +++en +L kk+
  Aradu.0Q5NS  81 NPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKV 170
                  67899*********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.473161IPR002100Transcription factor, MADS-box
CDDcd002651.28E-41278No hitNo description
SuperFamilySSF554553.14E-32292IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2383170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.40586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TAKLYEYANT  60
SMKSVIERYN SCKEEEQQLI NPESEVKFWQ REAEILRQQL QNLQENHRQL MGQHLYGLSV  120
RNLQDLENQL EMSLQGVRMK KEQILTEEIK ELNRKGNLIH QENLELFKKV NLMQEENTQL  180
CRKVYGTSEI EATSRNGFIP IPYGIQVGGG GSQALVQLQL CQPDQEAYET STSATR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21183183MEF2C
5f28_B5e-21183183MEF2C
5f28_C5e-21183183MEF2C
5f28_D5e-21183183MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.0Q5NS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963125.11e-173MADS-box transcription factor 23 isoform X2
SwissprotQ388401e-100AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLA0A444WW381e-171A0A444WW38_ARAHY; Uncharacterized protein
STRINGAES959161e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-102AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]