PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.0M5LW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HB-PHD | ||||||||
Protein Properties | Length: 714aa MW: 80808.2 Da PI: 8.4319 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.8 | 2.5e-10 | 499 | 543 | 9 | 53 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F+ n p ++ +e+++k+lg++ ++V+ WF+N R+ Aradu.0M5LW 499 HHAVEKLRQVFADNELPPRSVKEHISKELGIDAAKVSKWFKNARY 543 7899***************************************97 PP | |||||||
2 | PHD | 35.4 | 2.4e-12 | 238 | 293 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++k Aradu.0M5LW 238 FCAKCKLpeAFPDNDIILCDgTCNRAFHQRCLDPPLDTENIPPGdqCWFCKFCECK 293 699999855556********56********************99999******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.66E-14 | 230 | 296 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 6.2E-12 | 234 | 294 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.424 | 236 | 293 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 1.8E-9 | 238 | 293 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 1.4E-8 | 238 | 291 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 4.62E-29 | 238 | 290 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 239 | 290 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 485 | 542 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.592 | 488 | 548 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-8 | 490 | 552 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-9 | 491 | 552 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.23E-7 | 491 | 552 | No hit | No description |
Pfam | PF00046 | 8.3E-8 | 498 | 543 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 714 aa Download sequence Send to blast |
MRDTEKKLNK RGFRKSSHSR EHTDSKLDLS PRFETSSNKG QGKKQKLKSK PHKLVVCTAT 60 SRGTATDSSS IKGSIKGASS EKLIVGQNMH YNDGKSLQML SSTKQPGEKI SFCPIVDRND 120 ADGEVNIQKV KRRRRRKRRR DNVDLDDALR LQRRTRYLLI KMKVEQNLID AYSGEGWKGQ 180 SREKIRPEKE LQRAKKQILK CKLGIRDVIC QLDALSSVGR IEDSVIAPDG SVYHEHIFCA 240 KCKLPEAFPD NDIILCDGTC NRAFHQRCLD PPLDTENIPP GDQCWFCKFC ECKMEILEAT 300 NAHLGTDFSL DSTWQDVFKE EATVPDDCAA LLNPEEEWPS DDPEDDDYNP DRRENTHNIN 360 AEGTDESPSD SSSSISLSSL NDEYSPVDKA MSLEYLSVNS CVDSDGYGEI VCSRRQRKAV 420 DYRKLYDEMF KDAPPCEQVS EDEDWGPGKR KRREKESDAA NTLMTLHESD NKFPNNENND 480 TVREGTHTHI KRSCFRIPHH AVEKLRQVFA DNELPPRSVK EHISKELGID AAKVSKWFKN 540 ARYLALKTRK HQVEGGELPL SLLCKTSKGS SLQNVDKDEI LQKSKASKIA MVHSPNNGNG 600 ITDRQKVKSS GSIWKKRQPE ISPAKTAENG NKDLEEGSDD VGLKKLLQEK KRKMEFVFGG 660 DSKAAELEFE RLSKLKAKLD SMKVKLIEVQ NHRAKGAKEP CVIYVPTAQL REKG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | KRRRRR |
2 | 131 | 138 | RRRRRKRR |
3 | 131 | 139 | RRRRRKRRR |
4 | 133 | 139 | RRRKRRR |
5 | 133 | 140 | RRRKRRRD |
6 | 135 | 139 | RKRRR |
7 | 449 | 454 | RKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.0M5LW |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965165.1 | 0.0 | pathogenesis-related homeodomain protein isoform X1 | ||||
Swissprot | P48785 | 1e-145 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A445D8L1 | 0.0 | A0A445D8L1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004487993.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-146 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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