PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.07VTE | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23598 Da PI: 9.5393 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.2 | 4.4e-21 | 83 | 172 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++Y + GF vr ++ +++ +g++++r+ vC++ g+r+ee +k+e+ r +r+ t+ C+a+++ ++++ +kw+v ++ +eH+Hel+ Aradu.07VTE 83 RFYKTYTMMHGFAVRLDEVRRN-SDGSVIMRQIVCNRAGSRKEEVEKDERIRDHRPLTQGCCRARIRARLDTkIHKWKVVSFYEEHSHELV 172 5*****************9998.8999********************9***********************989***************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.8E-18 | 83 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDAFISYALT KNRNASKDKE RFIEDSIELF MKLNAPQPHS SLKLKEKSKS SSTLHIDPAL 60 SPATTPTIAA TSILFTDEEA VYRFYKTYTM MHGFAVRLDE VRRNSDGSVI MRQIVCNRAG 120 SRKEEVEKDE RIRDHRPLTQ GCCRARIRAR LDTKIHKWKV VSFYEEHSHE LVDPIYVSMM 180 PEYRTFSISD KAQAKNLHDL GIRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.07VTE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016186048.1 | 3e-85 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025636347.1 | 3e-85 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445AL07 | 6e-84 | A0A445AL07_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17158 | 2 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-13 | FAR1-related sequence 5 |