PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.07I6M | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 942aa MW: 107996 Da PI: 9.3064 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 125 | 217 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv s +l++g+l lpk+f +++g + +k + l+ ++g +W+v + ++ ++v+++GWkeFv ++ g ++ F+++g+s+ v++++ Aradu.07I6M 125 FFKVI-ISQSLQQGILKLPKNFSRKYGAS--LPKPVFLKPPNGTEWKVDW--TMHDAAVVFENGWKEFVTYYSIDHGHVLKFEYNGNSKL--GVQICD 215 66666.678888999***********977..6677***************..********************************997665..899999 PP SS CS B3 99 ks 100 ks Aradu.07I6M 216 KS 217 85 PP | |||||||
2 | B3 | 48 | 2.3e-15 | 468 | 557 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 fk+ s +l+ g l +p++f++++g s + l+ ++g +W+v+ +k++++++l+ GW+eF+ L+ g + F+++++s+f v++++ Aradu.07I6M 468 FKII-LSTTLEDGKLKIPNSFTKKYGDG--LSNPVFLKPPDGTEWKVEW--TKQDDGIFLEHGWNEFAMYYSLDHGHLLFFEYKNTSQF--EVQICE 557 4444.488899999***********755..6667***************..********************************998999..898886 PP | |||||||
3 | B3 | 53.1 | 5.8e-17 | 686 | 771 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f +++ps++++ + + +p kf++++ +k + t +le gr+W v++ + ++ +++GWk+F+k+n L++gD++vF+l++ ++ ++v+ Aradu.07I6M 686 FMVIMKPSYANSYS-MNIPSKFTAKYLKK---QATAILEVhDGGRTWAVTY--SFGK----FSSGWKRFAKDNSLNVGDICVFELTNPKDLYFKVS 771 66778888888887.***********544...235666662466*******..5555....789********************987677755555 PP | |||||||
4 | B3 | 44.4 | 3e-14 | 845 | 939 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ff + ++++ l+++r ++p f++++ +k + ++ +W++kl +y+++++ ++l++GW+ F++ +Lk+gD+++F+l++++++ + v++f Aradu.07I6M 845 FFMIIIKPSFLRQRRPSIPAFFIRNYLKK-TH---IVTFKFGETRWRIKLlRYTRYRSPITLSNGWSLFCRGSRLKAGDVCIFELINKEDAAFDVHLF 938 7778899999*************988544.33...4444457799****9777999999***************************999998999988 PP - CS B3 98 r 98 r Aradu.07I6M 939 R 939 7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.87E-20 | 118 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-19 | 119 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.014 | 124 | 217 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.84E-13 | 124 | 215 | No hit | No description |
SMART | SM01019 | 5.4E-14 | 125 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-12 | 331 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-11 | 334 | 419 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.59E-8 | 337 | 417 | No hit | No description |
PROSITE profile | PS50863 | 9.883 | 338 | 438 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.023 | 338 | 426 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-7 | 338 | 417 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.37E-19 | 461 | 558 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-19 | 463 | 557 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.31 | 466 | 559 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.67E-13 | 466 | 556 | No hit | No description |
SMART | SM01019 | 4.5E-15 | 467 | 559 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-13 | 468 | 557 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-21 | 678 | 774 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-20 | 681 | 779 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.65E-19 | 684 | 774 | No hit | No description |
PROSITE profile | PS50863 | 13.126 | 685 | 776 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-17 | 686 | 776 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 686 | 772 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 838 | 939 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.41E-15 | 839 | 940 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.01E-13 | 844 | 939 | No hit | No description |
SMART | SM01019 | 4.9E-9 | 845 | 941 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-12 | 845 | 939 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.041 | 845 | 941 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 942 aa Download sequence Send to blast |
MIKPPRGSTS LSHFLVQFHY NSLSHCISTR HFPHSFATQQ IKKAEVPIIH QLKGPSHHSL 60 SAITQLNSYK LCCNVFPFLW CWIIAHCTVA IRKCNPVGLN QQDPSQTGSS PISHTPSMTS 120 KPVRFFKVII SQSLQQGILK LPKNFSRKYG ASLPKPVFLK PPNGTEWKVD WTMHDAAVVF 180 ENGWKEFVTY YSIDHGHVLK FEYNGNSKLG VQICDKSGLE IKYPFNVNQQ EKVNIIEISD 240 EEVQAFDEMP QRQNNRRKSP KSQLNQRNGN QSQGTSFLKS TSTSIEKELD GDEEDKSKDS 300 ISIKDRKETQ TTSKVTSPLA ETSGTLKEAE KFTSKNPFFI INVTKKFLDQ SRPNVPIDFV 360 KKYLKQKQYA MVRFRNKLWP LKLLPYVTKK ESIRLSTGWN LFAKASELQA GDSLMFTSLD 420 LTPKQSIWDS AMSILHYNIG EPEKLRKMNE EDQATPPPMN NSNAVLFFKI ILSTTLEDGK 480 LKIPNSFTKK YGDGLSNPVF LKPPDGTEWK VEWTKQDDGI FLEHGWNEFA MYYSLDHGHL 540 LFFEYKNTSQ FEVQICEVSG LEIDYPFHVI QQENENIEQI SHEADQVFDD MPQSQNNRMK 600 SPMFYPQPSN TTREVRTSCS LQNLPLIHQI NGDECQGTSF DKSTFASIKK ELDEDIGGST 660 PCPRVERLKQ TLNKATTSKS KQNPSFMVIM KPSYANSYSM NIPSKFTAKY LKKQATAILE 720 VHDGGRTWAV TYSFGKFSSG WKRFAKDNSL NVGDICVFEL TNPKDLYFKV SITRIEEEEL 780 PLSQVEGDRV NCLEPGKVNY VESKSDIMIK VKKETQETSM ATPPGFEPNE EALKEAKKFT 840 SENPFFMIII KPSFLRQRRP SIPAFFIRNY LKKTHIVTFK FGETRWRIKL LRYTRYRSPI 900 TLSNGWSLFC RGSRLKAGDV CIFELINKED AAFDVHLFRC HS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-12 | 666 | 777 | 30 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-12 | 666 | 777 | 30 | 144 | B3 domain-containing transcription factor VRN1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.07I6M |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020988168.1 | 0.0 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A444XAP4 | 0.0 | A0A444XAP4_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-35 | B3 family protein |