PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.05DT4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 343aa    MW: 39765.1 Da    PI: 6.7729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.05DT4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31031.6e-32901981100
                  EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  f+k ltpsdv+k++rlv+pk++ae++         +g + ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F++++ ++
  Aradu.05DT4  90 FEKPLTPSDVGKLNRLVIPKQHAEKYfpltasateSGTECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADS 187
                  99****************************9999866677899*************************************************988899 PP

                  E..EEEEE-SS CS
           B3  90 felvvkvfrks 100
                  ++l+++++r+s
  Aradu.05DT4 188 QRLFIRWRRRS 198
                  99******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-4281204IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-3185198IPR015300DNA-binding pseudobarrel domain
CDDcd100173.45E-2988188No hitNo description
PfamPF023622.9E-2990198IPR003340B3 DNA binding domain
PROSITE profilePS5086313.78990198IPR003340B3 DNA binding domain
SMARTSM010192.0E-2690198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSINHYSSSP MDLQETTPLW WTQQPQPPLH FNNNIHNSQN TPRFNLNNEE TDTATTSHEG  60
DEEEEEENLP EPIQQDDNNH QQQQHNERMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLTA  120
SATESGTECK GLLLSFEDES GKCWRFRYSY WNSSQSYVLT KGWSRYVKDK RLDAGDVVSF  180
ERHRADSQRL FIRWRRRSSP VAQVSRAPHA DVNNDKTGVA WTSGFYCAHP PYPAHHLHNQ  240
HLTYPQQHEG SSSSLHAGSQ GKNQRMRPVG NCSSSSSKVL RLFGVNMECQ TQHDDDSQPS  300
TTKEDTSNSD THHFYHHNYY HQPSNNSHPN HNHMLPHQQS YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51871975113B3 domain-containing transcription factor NGA1
5os9_B1e-51871975113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.05DT4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951424.10.0B3 domain-containing protein At2g36080 isoform X2
SwissprotQ8RYD38e-63Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A445E7G20.0A0A445E7G2_ARAHY; Uncharacterized protein
STRINGGLYMA10G08871.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.17e-65B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]