PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.03MTI

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 449aa MW: 50557.5 Da PI: 9.0237

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.03MTI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	8.2e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.03MTI 51 KFYRNYAKAAGFSTRVRCTNSK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************986665..7779*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.124	245	281	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	253	278	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MDHSISDCLL NPGEVDYEFE SNEVPEPLSV VDDELVPKVR MTFTTLEDAG KFYRNYAKAA 60 GFSTRVRCTN SKGNEIKNQL ITCSREGKWK SKISPTEKTN PTASLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMPKQHRELS ILLIQFVKQY DNCLGSREQA ERESDAVDFH 180 TVVPCATKSS IEAQFQDAYT HAKFRKVQAQ FRGKANCITR LKNSALGYSV YEVVEQVSSS 240 IFNKFSVTYD SVAAEVKCQC LLFESRGILC RHALSVLSFE LPSHTKRVKR RHTHIKSSHD 300 EPLMEPRSKR FDQLVFRSQN ICKFASESEE LTAILHRAYD NAMAEMEALK AKRKGTSSSL 360 SHEDANLESV NELQSRPRIR TRGRPKNMLG SKLEKQIANA TKKKKTKVLS EINVFDAASA 420 AHSNCSQYQG HVINYQFRVP AAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MDHSISDCLL NPGEVDYEFE SNEVPEPLSV VDDELVPKVR MTFTTLEDAG KFYRNYAKAA  60
GFSTRVRCTN SKGNEIKNQL ITCSREGKWK SKISPTEKTN PTASLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMPKQHRELS ILLIQFVKQY DNCLGSREQA ERESDAVDFH  180
TVVPCATKSS IEAQFQDAYT HAKFRKVQAQ FRGKANCITR LKNSALGYSV YEVVEQVSSS  240
IFNKFSVTYD SVAAEVKCQC LLFESRGILC RHALSVLSFE LPSHTKRVKR RHTHIKSSHD  300
EPLMEPRSKR FDQLVFRSQN ICKFASESEE LTAILHRAYD NAMAEMEALK AKRKGTSSSL  360
SHEDANLESV NELQSRPRIR TRGRPKNMLG SKLEKQIANA TKKKKTKVLS EINVFDAASA  420
AHSNCSQYQG HVINYQFRVP AAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.03MTI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	1e-150	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445CV52	0.0	A0A445CV52_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	5e-14	far-red elongated hypocotyls 3