PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.001N3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 644aa MW: 71239.7 Da PI: 7.3719 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.4 | 5.4e-18 | 309 | 408 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l + Aradu.001N3 309 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIM 404 89**************************555567778***************9989999999***9.********************876.7777777 PP EEE- CS B3 95 kvfr 98 ++++ Aradu.001N3 405 GFRK 408 7765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.0E-29 | 301 | 417 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-19 | 306 | 408 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.52E-22 | 307 | 408 | No hit | No description |
SMART | SM01019 | 2.7E-19 | 309 | 409 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 309 | 408 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.096 | 309 | 410 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.497 | 574 | 624 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 9.8E-11 | 579 | 621 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 644 aa Download sequence Send to blast |
MESRSCMNVV CATLTSIQWR KGWALRSGEF ADLCDKCGSA YEQSIFCEKF HSNDSGWREC 60 VSCGKRLHCG CIASKSQLEL LDSGGVAGTE KPTGSGASKI KNVSEQLCPS LANQLNVRGM 120 QVGHSTDSDG LRWWLKPHNP DANVPFPEIK TEEGLPSTAE LGSQLISQFH CKSNGSSRVA 180 KSDNCQADME MQDIYESLAH ANLSMTLASP SGNSNPFHSA IADEREQSKT SPPLLLGSRS 240 RHLLPKPPRS SLGSSLETNA AMVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD 300 SNSTIVPLFE KMLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF 360 RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLIMGFRKAT NSAAVQESHP 420 SNMPNGSYSS ETSYSGVYEN LPILSGYSGL LQSQKGSSES PLNTLSKKWN SAGGDMNWHN 480 IEIPEKRTRE GSLLPAVLVP EKKKTRNIGS KSKRLLIDSQ DALELKLTWE EAQDLLRPPP 540 TAKPSIVMIE DHVFEEYEEP PVFGKKSIFV ARSAGINEQW TQCDNCSKWR KLPVDVLVPP 600 KWTCADNLWD QSRRACSAPD ELSPREMDNL LRLIKGISPP LEFL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-70 | 287 | 416 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.001N3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950568.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_015950570.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_015950572.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A445E9X1 | 0.0 | A0A445E9X1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G04330.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|