PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G402300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CPP
Protein Properties Length: 622aa    MW: 67002.7 Da    PI: 6.5667
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G402300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.43.3e-14123162242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  Aqcoe7G402300.1.p 123 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 162
                        89**************************.********9875 PP
2TCR51.32.3e-16207246140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cs++C+C dCkN e
  Aqcoe7G402300.1.p 207 KHNKGCHCKKSGCLKKYCECFQANILCSDNCRCIDCKNFE 246
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-16122162IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.202123247IPR005172CRC domain
PfamPF036384.3E-11124159IPR005172CRC domain
SMARTSM011142.5E-20207248IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.7E-13210245IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MEQSDGGENP PEKLQVVTTT TTTTSTESLT VVSDLPKKLA RQLDFTPLST TSTTVVPPEP  60
PQQQQQQQQQ KQLQKNQPTA IAAPPPTVPA APPPPRSHPI VKPESPRSRP RSTSDLKDGT  120
PKKQKQCNCK HSRCLKLYCE CFASGIYCDG CNCVNCYNNV ENEAARQEAV EATLERNPNA  180
FRPKIASSPH GIRDSREDAG EVSMVVKHNK GCHCKKSGCL KKYCECFQAN ILCSDNCRCI  240
DCKNFEGSEE RRALLHGDHG NSLYMQQAAA NAAITGAVGS SGYGSPPAFK RRKNQDLFFG  300
TTANDPSTHR LGQYAQATHL KASSTFPSLS SSPFPRVVNP AAHGSSKSTY RSLLADVVHP  360
QDVKELCSLL VIVSSEAGKT LAEKKATEEK QAGKDDQAEN SLASCAQEQE VIQENQDGQK  420
MVIDGPSSGD QAEKTSADDS GSDGPDVQKE RPLSPLTQAL LCDEQGSDGS DVPKERPMSP  480
GTLALMCDEQ DTMFTANGST DGGLGGGGGQ NRPPKLPYGK DMSDIYMEQE RLVLTKFRDC  540
IRQIITCGRI KEEKYASSST RTEVREPETI SNGVARSYLP SAVSEVSQIA NAVTVASNNI  600
QTIKDGYPSA NGTTVTPKIE N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-321152562132Protein lin-54 homolog
5fd3_B1e-321152562132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-32AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249672.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-161TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2G5DGL00.0A0A2G5DGL0_AQUCA; Uncharacterized protein
STRINGAquca_020_00243.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-131Tesmin/TSO1-like CXC domain-containing protein