PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G393500.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CPP
Protein Properties Length: 965aa    MW: 106089 Da    PI: 7.9255
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G393500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.85.7e-15546584341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+CnC++skClk+YCeCfaag +C+e C C++C+Nk +
  Aqcoe7G393500.3.p 546 CKRCNCRRSKCLKLYCECFAAGIYCAEPCACQECFNKPQ 584
                        89**********************************976 PP
2TCR51.12.7e-16632670139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks ClkkYCeC+++g+ Cs  C+Ce+CkN 
  Aqcoe7G393500.3.p 632 RHKRGCNCKKSMCLKKYCECYQSGVGCSAGCRCEGCKNA 670
                        589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-15544585IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.696545672IPR005172CRC domain
PfamPF036383.0E-11547582IPR005172CRC domain
SMARTSM011141.1E-16632673IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.7E-12634670IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MDSPETNKIV TSTSTSSSTT SSPVVQESPF FNYLRTLSPI KPVKAAHVAQ GFPELSIPTP  60
PPVFTSPRLN PQSETIFLNR SKHFHSSNKK LSIGHEGNRD RGTDISERPI SRLTVRLVSC  120
SQKGRDSKCS AQVQPSSPSQ FVDEFLADPV EVVRTNSSDP DVTCLNHVDD TPEVQLGCIR  180
SKETTVKENN VNDELLKYVE NGSDVQIKSS EQTEVDLQGR SVAVFKTGKM ENGESQSVVY  240
QDLASEDVND INFPNSCIKP VSGAQNSPHG KARSAEGSQE ATCDNNNQVL SEIMQMGEYA  300
GVASNESAET KIVDPEETGQ NQRVLRRRCL QFEASVAHRK SIFSNQGFSS PAIISRCSRL  360
PANSTEMEML ESSELDCGIS NNICTANSSQ PMASKPSPCA AKTVETHNDK LNRSVRNGGN  420
PSIKAPLPSG IGLHLNSIVN TAAMGCTASL SRKPSENDYP SAQREKPPSV PNQYLPTESK  480
SFSVPASVLG KFSVKRLGYE LETQSIADNS ATFQFPNDNA DQIQEFNQLS PQKKRKRTFT  540
NEDEGCKRCN CRRSKCLKLY CECFAAGIYC AEPCACQECF NKPQYEDKVL ETRKQIESRN  600
PLAFAPKIVR RVTDSPANSI EENKKVTPAS ARHKRGCNCK KSMCLKKYCE CYQSGVGCSA  660
GCRCEGCKNA FGIKEGYGEV SERLSRKVDG ESWEDNSDGK LAMVTRSNFI EQEHCHPHNN  720
LTPLTPSLQY PNQGKDVHTS RLPGRRFLPS PESETNHLSL YAKSPGSTRY VFTHERRSKM  780
GDGNLDIVFD QEVEFSTTGR IDQFSPRWDG FEDICDLTPL PQTSSKAKAI LSPSNSRDSG  840
KVSQIQLQGS VRLSGSLRWR SSPITPTPQL GESKLRQEPD SDVGCAILED DTPDILKDTH  900
TPIKTVKASS PNQKRVSPPH NHLHNLRSSP SPGLKSGRKF VLQSISSFPP LTPYSDPKDC  960
SSKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1654966914120Protein lin-54 homolog
5fd3_B2e-1654966914120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532537KKRKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254334.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
TrEMBLA0A2G5DG740.0A0A2G5DG74_AQUCA; Uncharacterized protein
STRINGAquca_020_00165.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-68TESMIN/TSO1-like CXC 2