PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G393500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | CPP | ||||||||
Protein Properties | Length: 968aa MW: 106461 Da PI: 7.9255 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.8 | 5.7e-15 | 546 | 584 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+YCeCfaag +C+e C C++C+Nk + Aqcoe7G393500.2.p 546 CKRCNCRRSKCLKLYCECFAAGIYCAEPCACQECFNKPQ 584 89**********************************976 PP | |||||||
2 | TCR | 51.1 | 2.8e-16 | 635 | 673 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC+++g+ Cs C+Ce+CkN Aqcoe7G393500.2.p 635 RHKRGCNCKKSMCLKKYCECYQSGVGCSAGCRCEGCKNA 673 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.2E-15 | 544 | 585 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.61 | 545 | 675 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.1E-11 | 547 | 582 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-16 | 635 | 676 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.8E-12 | 637 | 673 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 968 aa Download sequence Send to blast |
MDSPETNKIV TSTSTSSSTT SSPVVQESPF FNYLRTLSPI KPVKAAHVAQ GFPELSIPTP 60 PPVFTSPRLN PQSETIFLNR SKHFHSSNKK LSIGHEGNRD RGTDISERPI SRLTVRLVSC 120 SQKGRDSKCS AQVQPSSPSQ FVDEFLADPV EVVRTNSSDP DVTCLNHVDD TPEVQLGCIR 180 SKETTVKENN VNDELLKYVE NGSDVQIKSS EQTEVDLQGR SVAVFKTGKM ENGESQSVVY 240 QDLASEDVND INFPNSCIKP VSGAQNSPHG KARSAEGSQE ATCDNNNQVL SEIMQMGEYA 300 GVASNESAET KIVDPEETGQ NQRVLRRRCL QFEASVAHRK SIFSNQGFSS PAIISRCSRL 360 PANSTEMEML ESSELDCGIS NNICTANSSQ PMASKPSPCA AKTVETHNDK LNRSVRNGGN 420 PSIKAPLPSG IGLHLNSIVN TAAMGCTASL SRKPSENDYP SAQREKPPSV PNQYLPTESK 480 SFSVPASVLG KFSVKRLGYE LETQSIADNS ATFQFPNDNA DQIQEFNQLS PQKKRKRTFT 540 NEDEGCKRCN CRRSKCLKLY CECFAAGIYC AEPCACQECF NKPQYEDKVL ETRKQIESRN 600 PLAFAPKIVR RVTDSPANSI MLQEENKKVT PASARHKRGC NCKKSMCLKK YCECYQSGVG 660 CSAGCRCEGC KNAFGIKEGY GEVSERLSRK VDGESWEDNS DGKLAMVTRS NFIEQEHCHP 720 HNNLTPLTPS LQYPNQGKDV HTSRLPGRRF LPSPESETNH LSLYAKSPGS TRYVFTHERR 780 SKMGDGNLDI VFDQEVEFST TGRIDQFSPR WDGFEDICDL TPLPQTSSKA KAILSPSNSR 840 DSGKVSQIQL QGSVRLSGSL RWRSSPITPT PQLGESKLRQ EPDSDVGCAI LEDDTPDILK 900 DTHTPIKTVK ASSPNQKRVS PPHNHLHNLR SSPSPGLKSG RKFVLQSISS FPPLTPYSDP 960 KDCSSKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-16 | 549 | 672 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-16 | 549 | 672 | 14 | 120 | Protein lin-54 homolog |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 532 | 537 | KKRKRT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010254334.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 4 | ||||
TrEMBL | A0A2G5DG64 | 0.0 | A0A2G5DG64_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_020_00165.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 4e-68 | TESMIN/TSO1-like CXC 2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G393500.2.p |