PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G309900.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | SBP | ||||||||
Protein Properties | Length: 197aa MW: 22438.7 Da PI: 8.3671 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 74.9 | 1.4e-23 | 148 | 195 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +Cq+egC+ dls+ak+yhrrhkvCe+hska++v++ gleqrfCqqCsr Aqcoe7G309900.4.p 148 RCQAEGCKIDLSNAKHYHRRHKVCEFHSKATKVVAGGLEQRFCQQCSR 195 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.8E-25 | 142 | 195 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 20.751 | 146 | 196 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.07E-22 | 147 | 195 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-17 | 149 | 195 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVSYVGLQSN NYKQLWDWET NPYNPNTSTT STTTNGNNNN HNPFITNSTN IFDCSHLSTL 60 PSSSFHGNLN FIPSSQFSEE YPSVDFLKKE GDNAEEFTMD MNNYYNGNGG RIGLNLGHRT 120 YFSSRETALI DRLFRRPRGF YQANQIPRCQ AEGCKIDLSN AKHYHRRHKV CEFHSKATKV 180 VAGGLEQRFC QQCSRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj0_A | 3e-18 | 149 | 195 | 6 | 52 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026404059.1 | 6e-48 | squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_026457660.1 | 7e-48 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2G5DBC7 | 1e-146 | A0A2G5DBC7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_024_00116.1 | 1e-146 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 2e-32 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G309900.4.p |