PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G309900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 388aa    MW: 43320.3 Da    PI: 7.9141
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G309900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.72.5e-41168244177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+ dls+ak+yhrrhkvCe+hska++v++ gleqrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  Aqcoe7G309900.1.p 168 RCQAEGCKIDLSNAKHYHRRHKVCEFHSKATKVVAGGLEQRFCQQCSRFHVLAEFDQAKRSCRKRLADHNRRRRKPQ 244
                        6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-34162230IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65166243IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39167246IPR004333Transcription factor, SBP-box
PfamPF031103.7E-31169242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MNNISTGVSE NWNNNSSNTS MVSYVGLQSN NYKQLWDWET NPYNPNTSTT STTTNGNNNN  60
HNPFITNSTN IFDCSHLSTL PSSSFHGNLN FIPSSQFSEE YPSVDFLKKE GDNAEEFTMD  120
MNNYYNGNGG RIGLNLGHRT YFSSRETALI DRLFRRPRGF YQANQIPRCQ AEGCKIDLSN  180
AKHYHRRHKV CEFHSKATKV VAGGLEQRFC QQCSRFHVLA EFDQAKRSCR KRLADHNRRR  240
RKPQLGQSTT DDSVVVLPAA AAAGAIKASE NAYPQVGPSA SISRSDHKET SLSSSTTTTV  300
PLTMSTASSA KSSSSGTHFI NGPDLSLGGD QQQHHHHHQA EQQRPFIYNQ QSTDLFNREN  360
NGAPYHNLFF SSSNESHDQS MFEADLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-291692421184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225242KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DBC40.0A0A2G5DBC4_AQUCA; Uncharacterized protein
STRINGAquca_024_00116.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.16e-49squamosa promoter binding protein-like 8