PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G291700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 167aa MW: 18938.9 Da PI: 9.7079 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.2 | 3.3e-21 | 11 | 58 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie+ + +vtf+kRr+g++KKA+ELS+LC+ ++a+++fss+gk y y Aqcoe7G291700.1.p 11 KIEDRKKLNVTFTKRRQGLFKKAKELSILCNSQIALLVFSSSGKPYVY 58 79*****************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.142 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-27 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.63E-26 | 4 | 59 | No hit | No description |
PRINTS | PR00404 | 2.7E-19 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-22 | 4 | 62 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-23 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-19 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MGKRRRTEIE KIEDRKKLNV TFTKRRQGLF KKAKELSILC NSQIALLVFS SSGKPYVYGD 60 LQNLTNRRSW DIEEMLDRTN TVAGLLQGLL VSQTLVSTAV LDEVLVHDFM DSIGLQEYTS 120 PLVAEKPKPL DRRGLECCSN EKFVCFLYYS CSTPSRGLLG VRNRSR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX680227 | 1e-107 | JX680227.1 Aquilegia coerulea MADS-box protein AGL66 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5DK20 | 1e-118 | A0A2G5DK20_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_018_00120.1 | 1e-119 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.1 | 4e-17 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G291700.1.p |