PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G241600.6.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SBP

Protein Properties

Length: 273aa MW: 29786.9 Da PI: 9.4926

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G241600.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.6e-41	179	256	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh+vCe hsk+p+v+v+gle+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+ Aqcoe7G241600.6.p 179 RCQVEGCNLDLTSAKDYHRRHRVCESHSKCPKVVVAGLERRFCQQCSRFHDLLEFDEKKRSCRRRLSDHNARRRKPQN 256 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.2E-35	173	241	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	33.189	177	254	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-39	178	259	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-31	180	253	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDWNIKTPSQ WEWDNPMIFN GKMSETPKQV QPTGWEIEGN GGIDNASFSS GGGGSSGSDV 60 GNASSSKSSI SVSVDSSSKG ETRIPKFMLE TTNGRRTQDL GKGKELGRVE ESGTSPTLGV 120 SVGSGEQLIG LKLGKRTYFE DICGGDSVKS SSSYSPSPTS STTAGKRSRA SYQSTQTPRC 180 QVEGCNLDLT SAKDYHRRHR VCESHSKCPK VVVAGLERRF CQQCSRFHDL LEFDEKKRSC 240 RRRLSDHNAR RRKPQNDAIQ FSSSRLSSSF YG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	180	253	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	252	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252163.1	1e-123	PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
Refseq	XP_010252164.1	1e-123	PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
Refseq	XP_019055865.1	1e-123	PREDICTED: squamosa promoter-binding-like protein 12 isoform X4
Swissprot	A2YGR5	8e-82	SPL12_ORYSI; Squamosa promoter-binding-like protein 12
Swissprot	Q5Z818	8e-82	SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2G5DKF8	0.0	A0A2G5DKF8_AQUCA; Uncharacterized protein
STRING	Aquca_018_00218.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	5e-64	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Aqcoe7G241600.6.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu Q, et al. The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f. J Integr Plant Biol, 2015. 57(10): p. 819-29 [PMID:25677853]