PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G241600.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 382aa    MW: 41980.9 Da    PI: 9.4342
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G241600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.8e-41179256178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC+ dl++ak+yhrrh+vCe hsk+p+v+v+gle+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  Aqcoe7G241600.5.p 179 RCQVEGCNLDLTSAKDYHRRHRVCESHSKCPKVVVAGLERRFCQQCSRFHDLLEFDEKKRSCRRRLSDHNARRRKPQN 256
                        6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-34173241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114133.189177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-39178259IPR004333Transcription factor, SBP-box
PfamPF031102.6E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDWNIKTPSQ WEWDNPMIFN GKMSETPKQV QPTGWEIEGN GGIDNASFSS GGGGSSGSDV  60
GNASSSKSSI SVSVDSSSKG ETRIPKFMLE TTNGRRTQDL GKGKELGRVE ESGTSPTLGV  120
SVGSGEQLIG LKLGKRTYFE DICGGDSVKS SSSYSPSPTS STTAGKRSRA SYQSTQTPRC  180
QVEGCNLDLT SAKDYHRRHR VCESHSKCPK VVVAGLERRF CQQCSRFHDL LEFDEKKRSC  240
RRRLSDHNAR RRKPQNDAIQ FSSSRLSSSF YDARQQMSVL FNSAPLAHTR ISATRETTYC  300
IKPEAKESVL RSVKAGMVNE QLNLSNNALP NGITTMRRDS DRLSLMQFKS TNADVLSQGM  360
TCIYSQVPID ITLNNFIFQI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-291802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KKRSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252163.11e-147PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_010252164.11e-147PREDICTED: squamosa promoter-binding-like protein 3 isoform X1
RefseqXP_019055865.11e-147PREDICTED: squamosa promoter-binding-like protein 12 isoform X4
TrEMBLA0A2G5DKF80.0A0A2G5DKF8_AQUCA; Uncharacterized protein
STRINGAquca_018_00218.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-65squamosa promoter binding protein-like 2