PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G192900.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 298aa    MW: 33995.9 Da    PI: 9.9728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G192900.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12197294196
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                        ffk+++  ++ +++ +++pk+f+ +h     g     s+tl+l d +g++W v++  + + ++   +tkG   F ++ ++k  D++vF+l++
  Aqcoe7G192900.5.p 197 FFKITMGRSYINQASVSIPKSFTVSHlphvqG-LGSLSFTLQLSD-QGKKWHVEC--NHCHRGvWRITKGFFPFIRESNIKIVDICVFELIN 284
                        89999999*******************99953.445899999888.9********..666666578************************98 PP

                        SSEE..EEEE CS
                 B3  87 rsefelvvkv 96 
                        +++  ++v++
  Aqcoe7G192900.5.p 285 KENILFNVHI 294
                        7666566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-53285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-16190295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-15191295IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-10197294IPR003340B3 DNA binding domain
CDDcd100175.72E-10197296No hitNo description
PROSITE profilePS508639.827197297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMNQSFFSFK QMAELKLKQK GDNPSPSIVR MKRNKFFRVI KSRYPQIEFP SEFVEEHGYK  60
LPDELVLKVR TGDFWNIKVK KFGERIRTLR DAEIDYPLKP HKFKNTIHGG AKLGESTNKE  120
CVKNSTKNLG MTSPREDTHQ RTEHGEPSVY RANEDMAPED VPAPKQVSCD TPAVSPSQTN  180
ADGVGQRTGS FNSKYPFFKI TMGRSYINQA SVSIPKSFTV SHLPHVQGLG SLSFTLQLSD  240
QGKKWHVECN HCHRGVWRIT KGFFPFIRES NIKIVDICVF ELINKENILF NVHILSC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5FBF30.0A0A2G5FBF3_AQUCA; Uncharacterized protein
STRINGAquca_001_00601.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-09related to vernalization1 1