PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G180500.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | FAR1 | ||||||||
Protein Properties | Length: 447aa MW: 50436.1 Da PI: 8.9946 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.1 | 4e-20 | 55 | 139 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YAk vGFsvrk++s+ + +g++ +r ++Csk+g ++++ + r+ +rtgC+a++ ++++ +k+ ++++++ HnHel+p Aqcoe7G180500.9.p 55 NFYNQYAKAVGFSVRKDSSTV-RADGTVLRRVLCCSKQGLYKDRRLL----TNVRVRSRTGCEARIIIRRH-GEKFLLIEFNEFHNHELVP 139 6***************98776.59999**************999888....899999************99.99***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-17 | 55 | 139 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MEHNEIIDEE KKRRVNKLLD MMDAKVKECS PEIDSTVQLL PKVGMLFQSE DCAYNFYNQY 60 AKAVGFSVRK DSSTVRADGT VLRRVLCCSK QGLYKDRRLL TNVRVRSRTG CEARIIIRRH 120 GEKFLLIEFN EFHNHELVPP SEVHRLRSQR KIEDSQARIM RNMYHEGIGP ADIYSSMCKR 180 VGGPQNLSFT KLDCVKFLQK IRHDDTVKNV VHSGNSMVVG CHPSLEKCDD CGTSMIVDCK 240 PFLRKGDGLG TSTVSECYPS STFQCNDLAH MALTIVAKGN TSEKSAVFAR KLLTQALEEL 300 DSFIKYDSDK MDHLVDIRNM NHDKRDESKK SVTEVGASIR LRNPPHNKSY ARVSAEKKAA 360 LGKGKGKKRF PKTPKGSYDQ ESIGAIGTTL LMLQDSSVLP KHHHNQMHSL ELLFACMTEG 420 NCSSTFTLAY ITMLFALCCI YTPHRI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5FAN0 | 0.0 | A0A2G5FAN0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_001_00496.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-25 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G180500.9.p |