PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G179300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 269aa    MW: 31050 Da    PI: 4.5806
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G179300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88.3e-34101012102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        F+ k+y++++d++++ +i+w + +nsf++l++ efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+h+sF +g+ +l
  Aqcoe7G179300.1.p  10 FVLKTYQMVDDPSTNLYIRWGSGNNSFLLLNPLEFADRLLPIYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFAHESFLRGQIQL 92 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i rkk 
  Aqcoe7G179300.1.p  93 LQNIVRKKY 101
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.0E-49699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-32699IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-35699IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-171033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-281099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-174860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-176173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEVSNTVAPF VLKTYQMVDD PSTNLYIRWG SGNNSFLLLN PLEFADRLLP IYFKHNNFSS  60
FVRQLNTYGF KKVDPDKWEF AHESFLRGQI QLLQNIVRKK YNNRSAYFVQ PKQELPYEDD  120
EEDVSNEVMR LKQEQQELEE ELEGMNKRLQ ATQRRPQQMM AFLIKVVEDP EILSKMTVEK  180
ENETMFGEKK RRLMISATSS SSLETMGQTL ILPEVPLDTT TGTSSDEASL TSIHDFTDYS  240
HQMLFFQEWT GSEEASSLSS YPFSLLGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2419911120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898330.18e-87heat stress transcription factor C-1
SwissprotQ9LV524e-72HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A2G5FAJ41e-163A0A2G5FAJ4_AQUCA; Uncharacterized protein
STRINGAquca_001_00485.11e-163(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-68heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]