PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G169200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | CPP | ||||||||
Protein Properties | Length: 718aa MW: 77815.6 Da PI: 8.2822 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.1 | 4.2e-14 | 159 | 196 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 + k+CnCk+s+Clk+YCeCfa+g++C+ C+C++C N+ Aqcoe7G169200.2.p 159 KPKQCNCKNSRCLKLYCECFASGVYCDG-CNCTNCYNNV 196 5699************************.********96 PP | |||||||
2 | TCR | 49.7 | 7.2e-16 | 244 | 283 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ck+s ClkkYCeCf+a+ Cs++CkC dCkN e Aqcoe7G169200.2.p 244 KHNKGCHCKRSGCLKKYCECFQANILCSDNCKCMDCKNFE 283 589***********************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.10.10 | 4.5E-5 | 55 | 116 | IPR011989 | Armadillo-like helical |
SMART | SM01114 | 1.5E-13 | 158 | 198 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.342 | 159 | 284 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.6E-11 | 161 | 195 | IPR005172 | CRC domain |
SMART | SM01114 | 4.0E-20 | 244 | 285 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-12 | 247 | 282 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
MEQVEGGELP PKILQSSTTT TEIITGGADF PQRKLARQLD FTAFTGVSTG VVLPENLQRQ 60 RQHSQLQLQL QQQQQQQQQQ QQKLQQQQQQ QQQQQQQQQQ QKIQPPQPQQ KQPLPQSQSQ 120 SQPNPPPTLL SRPLPILRAD SPRAHPRPSI NTKDNTPKKP KQCNCKNSRC LKLYCECFAS 180 GVYCDGCNCT NCYNNVGNEE ARHEAIEATL DRNPNAFRPK IESSSPHGIR EARDEARELP 240 MVGKHNKGCH CKRSGCLKKY CECFQANILC SDNCKCMDCK NFEASEERRA LFHGDHSNSL 300 YMQQVAANAA ITGAVGSSGY GTPPAFKRRK NPELLFGTTS RDPSISRLPH IPQANHPKAS 360 LPSSVPVGRA VIPAQLGSSM FAYRSLLADI LQPRDVKQLC SVLVLVAGKA AKTLSDKKDT 420 VETQKETNQM ECSLPSSTQE KEKEVGHPKS LVDDRSSGNQ ADEMVTDDSG SDVQKGRPMS 480 PGTLALMCDE QDSMFMAAAS PKDTLGNDNN TSVHLPYEQG KSDVYAEQER LILTGFRDYL 540 LKLVDCGTMK GKKYSALGTR TDSETQPVPV GNGHVRPLDP DMSVASHTAS PVTVAQPGPV 600 GNGHVRPPVP DMFAASDRAS PVTVAQPVPV GNGMSAASHT ASRVTVAQPV PVGNGMSAAS 660 HTASRVTVAQ PVPVGNGISA ASHTASRVTV ACKDDLSSKV GFPSENGFMK PKIEAEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-32 | 157 | 293 | 10 | 132 | Protein lin-54 homolog |
5fd3_B | 6e-32 | 157 | 293 | 10 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010249672.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-156 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2G5FA75 | 0.0 | A0A2G5FA75_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_001_00408.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-156 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G169200.2.p |