PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G147300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 769aa    MW: 88910.9 Da    PI: 8.0247
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G147300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.56.1e-2063150191
               FAR1   1 kfYneYAkevGFsvrkskskkskrn.geitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++YneYA++vGFs+++++++k++++ ++i+ +t++Cs+eg+ ++ ++     r++r+e r gC ak+++k++kd+k+e+tk+  eH+Hel+p
  Aqcoe7G147300.1.p  63 NYYNEYARTVGFSIKIKRTNKHRHDpEKIVLQTLCCSCEGTYTKVNTP----RKRREERRFGCLAKFEIKLNKDEKFELTKFIVEHTHELVP 150
                        69**************999998655277999**********9997766....999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1663150IPR004330FAR1 DNA binding domain
PfamPF105515.0E-31271365IPR018289MULE transposase domain
PROSITE profilePS5096610.212550588IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-6563585IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-8563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
AEIKGCTLSE DSQEKNPIDV DASDNKNVKD TTSEIQGESA ATLDENLIPK IGLIFENLKD  60
AYNYYNEYAR TVGFSIKIKR TNKHRHDPEK IVLQTLCCSC EGTYTKVNTP RKRREERRFG  120
CLAKFEIKLN KDEKFELTKF IVEHTHELVP PTCSYLLRSH RGVKKSQAGI MKKMHSSGLQ  180
PSDIYYYFCA EAGGAEHVNF SQSDCNNLLQ RGRIEILKKG DAQCLLEYFK QKKQENKHFY  240
YNILTNEESE IRGIFFCDAL SRRDYELFGD VICFDTTFHT NNYNLVCAPI VGVNNHGQTT  300
IFGCGLLEGE TSDAIVWMFE NFLEVMGGKK SSTIFIDQSM AISNAIASIF PDAHHRLCIW  360
HIFQNGAKHL AKVFAEFDSF PQRFKECIYE PETVEEFEEI WKALLDDYGL EDNKWLHGLY  420
KLREKWAQVY AHAYFCAGIT TTQRSESINK FLKAYFPSNT LLRAFVDQYT KAMTCRRQKE  480
KEAETQMRQT KPIFCSNWSV EREASKVYTR KLFNLFQEEL KQIIDLRIIL ESGEGTVQIY  540
NVEQLGKRRR TRKVTYNHSD QSAQCTCRKF QFEGILCSHV LKLFRDLDLG NLPTQYYLKR  600
WTRSITDEVV YDSYGEVIPS DIDPKCTSRY SELSHIFQRL VVKGSKSDSL FSIIKSKALE  660
FELEVDTMAK NDEEREKNSK KSSAATQNHS IQNPDEEVEL RDPPKKRARG ESKTRKKSCL  720
EKKPSKKKKD LKQTDCSREQ FGVRSQVQDD ASALNQSTQV ILSFFFIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1704716KKRARGESKTRKK
2714728RKKSCLEKKPSKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026397296.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A200PMW30.0A0A200PMW3_9MAGN; FAR1 DNA binding domain
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-129FAR1-related sequence 5