PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G145000.5.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 473aa    MW: 53838.8 Da    PI: 6.9421
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G145000.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.4e-36421851128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 
                        lp+G++F+Ptd+el+ e+L++kve+ +       +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+   
  Aqcoe7G145000.5.p  42 LPAGVKFDPTDQELI-EHLEAKVEAGQdskshplI---DefipTIEGEdGICYTHPERLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqt 128
                        799************.99*****999966665443...143334766646**********.555666799******************8788 PP

                NAM  78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             t + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Aqcoe7G145000.5.p 129 ecdlqTGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 185
                        8888888999************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3838204IPR003441NAC domain
PROSITE profilePS5100533.51442204IPR003441NAC domain
PfamPF023654.1E-1643185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNKNQSSSDL IDAKLEEHQL CGSKQCPGCG HKLERKPDWL GLPAGVKFDP TDQELIEHLE  60
AKVEAGQDSK SHPLIDEFIP TIEGEDGICY THPERLPGVT RDGLSKHFFH RPSKAYTTGT  120
RKRRKIQTEC DLQTGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKN RKPEKTNWVM  180
HQYHLGQLEE EKEGELVVSK IFYQTQPRQC NWSDRGLNVI GEGSAERISS RRDSGSGSCS  240
SSKDVSTVRD DLSTVVSAST AGPGMSISSY PTIDIQQMKA DHFSFVPFRK SFDEVGVDEP  300
RRGRDASNHS CQQENEEHEH QMQHHVSHEV QQQQQPPPQQ HHHHHQVTTA AYQITRPLHP  360
ISTIIPPPPL NHTSIVPYED PYNISRILLQ NDKFQQQQQQ QQHHQVQQQH QLQQQQQQHK  420
LVGRSGSGLE ELLMGCTSTD IKDQESSITN PHEAEWLKYT FWPDPDNPDH HG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-144018513140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656241.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656242.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656243.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
RefseqXP_010656244.10.0PREDICTED: NAC domain-containing protein 8 isoform X1
SwissprotQ9M0F81e-173NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2G5F9G50.0A0A2G5F9G5_AQUCA; Uncharacterized protein
STRINGAquca_001_00211.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-125NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]