PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G145000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | NAC | ||||||||
Protein Properties | Length: 473aa MW: 53838.8 Da PI: 6.9421 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.7 | 9.4e-36 | 42 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+el+ e+L++kve+ + + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Aqcoe7G145000.1.p 42 LPAGVKFDPTDQELI-EHLEAKVEAGQdskshplI---DefipTIEGEdGICYTHPERLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqt 128 799************.99*****999966665443...143334766646**********.555666799******************8788 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 t + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Aqcoe7G145000.1.p 129 ecdlqTGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 185 8888888999************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-38 | 38 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.514 | 42 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-16 | 43 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MNKNQSSSDL IDAKLEEHQL CGSKQCPGCG HKLERKPDWL GLPAGVKFDP TDQELIEHLE 60 AKVEAGQDSK SHPLIDEFIP TIEGEDGICY THPERLPGVT RDGLSKHFFH RPSKAYTTGT 120 RKRRKIQTEC DLQTGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKN RKPEKTNWVM 180 HQYHLGQLEE EKEGELVVSK IFYQTQPRQC NWSDRGLNVI GEGSAERISS RRDSGSGSCS 240 SSKDVSTVRD DLSTVVSAST AGPGMSISSY PTIDIQQMKA DHFSFVPFRK SFDEVGVDEP 300 RRGRDASNHS CQQENEEHEH QMQHHVSHEV QQQQQPPPQQ HHHHHQVTTA AYQITRPLHP 360 ISTIIPPPPL NHTSIVPYED PYNISRILLQ NDKFQQQQQQ QQHHQVQQQH QLQQQQQQHK 420 LVGRSGSGLE ELLMGCTSTD IKDQESSITN PHEAEWLKYT FWPDPDNPDH HG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-14 | 40 | 185 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010656241.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010656242.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010656243.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Refseq | XP_010656244.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | Q9M0F8 | 1e-173 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A2G5F9G5 | 0.0 | A0A2G5F9G5_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_001_00211.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-125 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G145000.1.p |
Publications ? help Back to Top | |||
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