PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G125300.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HSF | ||||||||
Protein Properties | Length: 364aa MW: 41023.1 Da PI: 4.8435 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.7 | 2.1e-34 | 47 | 138 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+ye+++d+ ++ ++sws++ nsf+v+d +++++++LpkyFkh nf+SFvRQLn+YgFkkv+ ++ weF+++ F g+k+l Aqcoe7G125300.9.p 47 FLSKTYEMVQDPLTDPIVSWSTTRNSFIVWDLHKLSTNLLPKYFKHGNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLGGQKHL 129 9****************************************************************999.........*************** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l++ikr+++ Aqcoe7G125300.9.p 130 LKSIKRRRH 138 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.2E-57 | 43 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-35 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.31E-32 | 43 | 136 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.8E-30 | 47 | 136 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 47 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 86 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-18 | 98 | 110 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MENKKVKEED VVILLDSGGS GGSSSNSSVV FCPQPEERLH DIGPPPFLSK TYEMVQDPLT 60 DPIVSWSTTR NSFIVWDLHK LSTNLLPKYF KHGNFSSFVR QLNTYGFKKV DPDRWEFANE 120 GFLGGQKHLL KSIKRRRHVS QNMQQGVEAC VELGQYGLEG EIERLRRDRN TLMTEIVKLK 180 QQQQGSQERL IAFDAQLHAT ERKQQQMMIF LGRVVKNPAF LQQLRQRNDH FKELHGSGIG 240 RKRRLPVVHT AESILAGESL EAINMIPVTN YNNQSVTEVV TVESEIENLF SAASSNGLDC 300 QDQTVPGIND LDSGSATNIM WEELLNDDLI AGTERETVES EVEGEDLVAQ FPLLGDYVDD 360 LFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-23 | 45 | 136 | 18 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | LKSIKRR |
2 | 163 | 168 | RLRRDR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262066.1 | 1e-135 | PREDICTED: heat shock factor protein HSF30 | ||||
Swissprot | P41152 | 1e-114 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A2G5F8N0 | 0.0 | A0A2G5F8N0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_001_00047.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 2e-96 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G125300.9.p |
Publications ? help Back to Top | |||
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