PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G125300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 364aa    MW: 41023.1 Da    PI: 4.8435
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G125300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.1e-34471382102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye+++d+ ++ ++sws++ nsf+v+d +++++++LpkyFkh nf+SFvRQLn+YgFkkv+ ++         weF+++ F  g+k+l
  Aqcoe7G125300.3.p  47 FLSKTYEMVQDPLTDPIVSWSTTRNSFIVWDLHKLSTNLLPKYFKHGNFSSFVRQLNTYGFKKVDPDR---------WEFANEGFLGGQKHL 129
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++ikr+++
  Aqcoe7G125300.3.p 130 LKSIKRRRH 138
                        ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-5743136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3543136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3243136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.8E-3047136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-184770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-188597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-1898110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MENKKVKEED VVILLDSGGS GGSSSNSSVV FCPQPEERLH DIGPPPFLSK TYEMVQDPLT  60
DPIVSWSTTR NSFIVWDLHK LSTNLLPKYF KHGNFSSFVR QLNTYGFKKV DPDRWEFANE  120
GFLGGQKHLL KSIKRRRHVS QNMQQGVEAC VELGQYGLEG EIERLRRDRN TLMTEIVKLK  180
QQQQGSQERL IAFDAQLHAT ERKQQQMMIF LGRVVKNPAF LQQLRQRNDH FKELHGSGIG  240
RKRRLPVVHT AESILAGESL EAINMIPVTN YNNQSVTEVV TVESEIENLF SAASSNGLDC  300
QDQTVPGIND LDSGSATNIM WEELLNDDLI AGTERETVES EVEGEDLVAQ FPLLGDYVDD  360
LFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-234513618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKSIKRR
2163168RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262066.11e-135PREDICTED: heat shock factor protein HSF30
SwissprotP411521e-114HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2G5F8N00.0A0A2G5F8N0_AQUCA; Uncharacterized protein
STRINGAquca_001_00047.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-96heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]