PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe7G116400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Nin-like

Protein Properties

Length: 365aa MW: 41108.8 Da PI: 6.9209

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G116400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.4	2.8e-23	270	319	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++dl +yF+lpi AAk+L +c+T++K+iCR+y +kRWPhRk+ks+ Aqcoe7G116400.1.p 270 GKLKISDLVHYFHLPIDVAAKKLAICPTAIKKICRKYELKRWPHRKLKSI 319 68999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.802	259	339	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-19	272	319	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MTKYLVLLFF DDAICANNYS RPLISGEHET DAELVDPSDR NNLLDRSFTI EEVHAPCSEI 60 VAHSNGAVFG GTIDTIQEKN GQCSRDSIGS FDDPIDDRDE QEAGADHVNS DTNAMPLAVW 120 PPEPVPYNCS CCQVLRDIVH SNGTFTTKLE IHGRVGIICH AILEVRYDAS VQHQMIDFCM 180 RRMEDVKQYL MSYCQDRKEA GFVMLQDPLV TFYSALCAGL KWDENVNTFE LIQPFQTETA 240 GFGKKGHSVA ESSSIRLPQS SLAAQRVRTG KLKISDLVHY FHLPIDVAAK KLAICPTAIK 300 KICRKYELKR WPHRKLKSIE RKISELESNS TNKNGRESRR AQAKIERLKK DRDKILSGRV 360 CEIS*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MTKYLVLLFF DDAICANNYS RPLISGEHET DAELVDPSDR NNLLDRSFTI EEVHAPCSEI  60
VAHSNGAVFG GTIDTIQEKN GQCSRDSIGS FDDPIDDRDE QEAGADHVNS DTNAMPLAVW  120
PPEPVPYNCS CCQVLRDIVH SNGTFTTKLE IHGRVGIICH AILEVRYDAS VQHQMIDFCM  180
RRMEDVKQYL MSYCQDRKEA GFVMLQDPLV TFYSALCAGL KWDENVNTFE LIQPFQTETA  240
GFGKKGHSVA ESSSIRLPQS SLAAQRVRTG KLKISDLVHY FHLPIDVAAK KLAICPTAIK  300
KICRKYELKR WPHRKLKSIE RKISELESNS TNKNGRESRR AQAKIERLKK DRDKILSGRV  360
CEIS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890733.1	4e-88	uncharacterized protein LOC110809275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G116400.1.p