PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G111800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 556aa    MW: 61479 Da    PI: 5.8308
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G111800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS249.31.5e-761685472374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++lL  cA a+s+g+l+++q+lL  l+elasp+gd+++Rla++ ++AL ++l++s    +++++p + ++++      +l  f+e+sP+++f
  Aqcoe7G111800.1.p 168 EQLLNPCAIAISNGNLSRVQHLLYVLHELASPSGDANNRLATHGLRALTHHLSSSAAPSFSSVSPITFASTEPRLFQRSLLKFYEISPWFTF 259
                        689***************************************************9999999999999986555444455555********** PP

               GRAS  94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAee 171
                         + +aN  Il+ +++e    + vHi+D+++s+GlQWp+Ll+aL+ ++ ++pp +R+T v++ +++            +     +rL +fA++
  Aqcoe7G111800.1.p 260 PNAVANASILQILAQEsdssRSVHIVDMGVSHGLQWPTLLEALSHQSgGPPPLVRLTIVVATSTHknglsapfsMGPAGDDFPSRLLRFAKS 351
                        *************999888899*************************55667******9998888899998887778889999********* PP

               GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflea 260
                        +++++++n+l  + le+l++++L+++p+E+l+ + +++lh +    +++++ r+++Lk++k+ +Pk v+++e++  +++n+ ++F ++f++ 
  Aqcoe7G111800.1.p 352 INLNLQINLLNNHPLEALNPQTLKTSPNETLIFCAQFRLHCIN---HTTPDDRTDFLKILKGFEPKAVILCENDlsCSCNHcADFTTGFTRR 440
                        *********9999*****************************8...66777788********************5544444269******** PP

               GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                        + y + ++d++++ +    + r   Er++++ e+  ++ +  ++    +e +ekW e+++ +GF    ++e++ + a++llrk++ +++++v
  Aqcoe7G111800.1.p 441 VGYLWRFLDTTSSAF----KGRECEERRVMEGEAATALINGLEM----NEGKEKWCEKMRGVGFVGEVFGEDVIDRARALLRKHDsNWEMKV 524
                        ***********7775....5555555555555566666555555....78888********************************9999*** PP

               GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                        ++ + +++lgWk++p+ ++S W+
  Aqcoe7G111800.1.p 525 DDTDRCVCLGWKGQPVSFCSLWT 547
                        **********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.185141526IPR005202Transcription factor GRAS
PfamPF035145.1E-74168547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSPLLENLEQ NLNSDHILDW LEDTVSFIPS FLNDSYNVEE EANEYQWWEQ NQEQDQDLID  60
TSTPTLNVSS DHSHSTCITS LDLLTSSIPQ SADSSSSRKR KSPTTPSSKP PQEVVSKSCR  120
IGESNDSDAV VEEEVVKVKR TVSTKKAAGK GNGNNCNNGN SKEGRWAEQL LNPCAIAISN  180
GNLSRVQHLL YVLHELASPS GDANNRLATH GLRALTHHLS SSAAPSFSSV SPITFASTEP  240
RLFQRSLLKF YEISPWFTFP NAVANASILQ ILAQESDSSR SVHIVDMGVS HGLQWPTLLE  300
ALSHQSGGPP PLVRLTIVVA TSTHKNGLSA PFSMGPAGDD FPSRLLRFAK SINLNLQINL  360
LNNHPLEALN PQTLKTSPNE TLIFCAQFRL HCINHTTPDD RTDFLKILKG FEPKAVILCE  420
NDLSCSCNHC ADFTTGFTRR VGYLWRFLDT TSSAFKGREC EERRVMEGEA ATALINGLEM  480
NEGKEKWCEK MRGVGFVGEV FGEDVIDRAR ALLRKHDSNW EMKVDDTDRC VCLGWKGQPV  540
SFCSLWTLEK SINCA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-4116154681472Protein SHORT-ROOT
5b3h_B2e-4116154627418Protein SHORT-ROOT
5b3h_E2e-4116154627418Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196101SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273108.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2G5C8Q90.0A0A2G5C8Q9_AQUCA; Uncharacterized protein
STRINGAquca_076_00075.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-133GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]