PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G083300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 406aa    MW: 45757.7 Da    PI: 5.2116
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G083300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006526223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ C k+Fs+   L  H+r+H
  Aqcoe7G083300.1.p  5 TCKLCYKTFSNGRALGGHMRSH 26
                       6********************9 PP
2zf-C2H210.70.0017261283123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y+C+ C+k F++   L  H  +H
  Aqcoe7G083300.1.p 261 YQCGTCKKFFRSYQALGGHRASH 283
                        9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182426IPR007087Zinc finger, C2H2
SuperFamilySSF576677.16E-7526No hitNo description
PfamPF139121.9E-7527IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.16E-7256283No hitNo description
PROSITE profilePS501579.827261288IPR007087Zinc finger, C2H2
SMARTSM003550.35261283IPR015880Zinc finger, C2H2-like
PfamPF139129.9E-9261285IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
SMARTSM003550.44332354IPR015880Zinc finger, C2H2-like
PfamPF139127.1E-11332354IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829332354IPR007087Zinc finger, C2H2
PROSITE patternPS000280334354IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEKRTCKLCY KTFSNGRALG GHMRSHMVKL QTSPPLPLPP PPPPPSSHAS SHLHLQLEDG  60
SDSTSTTSSP SSYEEEDKGL SYGLRENPKK SFRLVDPEFS SFVVVDAGSV VQDRESETES  120
SKNPSRRRSK RNRKSGLAEQ HLQNHQEHES MMMMMKKQQL QPNKLSKSIT IESLIEPEPV  180
SSVSDTTPEE DVAWCLMMLS RGIRTRKREV EQEEEDEEED EEQKPEDDEE EEEEEEEKSI  240
EESDEDLEEI KIRVKRSRGK YQCGTCKKFF RSYQALGGHR ASHKKIKSCN ITTPSSSSVA  300
RLNQETEYEN EGNVGSAATV PNTPIVVDRR IHECPVCFRV FGSGQALGGH KRSHITGSTS  360
ITQQPIRPNN STRFNNNLID LNLPAPMEDE DQIELSAVSD VEFIR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258927.11e-125PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A2G5E3480.0A0A2G5E348_AQUCA; Uncharacterized protein
STRINGAquca_013_00741.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-42C2H2-like zinc finger protein