PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G078300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | YABBY | ||||||||
Protein Properties | Length: 180aa MW: 19908.5 Da PI: 8.0344 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 97.9 | 2.3e-30 | 10 | 130 | 2 | 123 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkeelleelkveeenlksnvekeesa 92 d+ s seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ + a + h+++s+ + ++ l+ + + ++++ Aqcoe7G078300.1.p 10 DHLSPSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPTGAnQLHFGHSFFSPTHNLLEEIPSPPPNLLIDQSNP 101 67899*******************************************99988766551568999999988877777777766666766666 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrq 123 + + + + + ++e+pr+p ++rP +r Aqcoe7G078300.1.p 102 NDHLMM-PVIRGGTDELPRQPAANRPR-RRD 130 666655.55677888999999999974.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.4E-29 | 14 | 68 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MSSSSAFSLD HLSPSEQLCY VHCNFCDTVL AVSVPCSSLF KTVTVRCGHC TNLLSVNMRG 60 LLLPTGANQL HFGHSFFSPT HNLLEEIPSP PPNLLIDQSN PNDHLMMPVI RGGTDELPRQ 120 PAANRPRRRD RESISLQPFH QGRDPTYQGR KSRYNSQGSF QCSCKELGPL STHPLWSHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC139089 | 3e-51 | KC139089.1 Vitis pseudoreticulata transcription factor YABBY1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264212.1 | 1e-69 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 5e-39 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 5e-39 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A2G5E2Y4 | 1e-129 | A0A2G5E2Y4_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_013_00693.1 | 1e-130 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 2e-28 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G078300.1.p |
Publications ? help Back to Top | |||
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