PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G052800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | TALE | ||||||||
Protein Properties | Length: 305aa MW: 34302.6 Da PI: 6.7217 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.1e-07 | 253 | 286 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Aqcoe7G052800.1.p 253 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 286 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.7e-09 | 207 | 228 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Aqcoe7G052800.1.p 207 ELKIELKQGFRSRIEDVREEIL 228 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 38 | 82 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.7E-17 | 40 | 81 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.9E-23 | 96 | 151 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.6E-16 | 99 | 150 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 207 | 227 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.612 | 227 | 290 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-10 | 229 | 294 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 229 | 293 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.46E-11 | 230 | 291 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 234 | 292 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 247 | 286 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MQEPSLGMLG SGSGGGGGGF SGLNENVSMS ISTADDHRQL KAEIATHPLY EQLLAAHVGC 60 LRVATPIDQL PLIEAQLSQS HQLLRFYASQ HHHQHHVLSP HEKQDLDHFL GQYLLVLCSF 120 KEQLQQHVRV HAVEAVMGCR EIEQSFQALT GVSLSEGTGA TMSDDEDDLQ LDCSMDQSGA 180 DGHDMLGFGP LLPTESERSL MERVRQELKI ELKQGFRSRI EDVREEILRK RRAGKLPGDT 240 TSVLKTWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHS NSQSVTALKS 300 KRKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 8e-13 | 230 | 286 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 303 | RKRNWHSNSQSVTALKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP331535 | 0.0 | KP331535.1 Aquilegia coerulea KXL3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021646838.1 | 0.0 | homeobox protein HD1-like isoform X1 | ||||
Refseq | XP_021646839.1 | 0.0 | homeobox protein HD1-like isoform X2 | ||||
Swissprot | Q9FPQ8 | 1e-163 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A2G5E201 | 0.0 | A0A2G5E201_AQUCA; KXL3 | ||||
STRING | Aquca_013_00468.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-161 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G052800.1.p |
Publications ? help Back to Top | |||
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